miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19101 5' -57 NC_004684.1 + 52469 0.66 0.704325
Target:  5'- cGACGGCaUGGCCgCCACcaccuccagcgcguuGCgaccgGUGUGCa -3'
miRNA:   3'- cCUGUUGgACCGG-GGUG---------------UGa----CACGCG- -5'
19101 5' -57 NC_004684.1 + 14189 0.66 0.668323
Target:  5'- cGAuCAACgUGcaGCUCC-CGCUGUGCGUc -3'
miRNA:   3'- cCU-GUUGgAC--CGGGGuGUGACACGCG- -5'
19101 5' -57 NC_004684.1 + 30368 0.66 0.668323
Target:  5'- aGGACAAgUuuuacggcguggUGGaCCCCACGCgcaucccgGCGCu -3'
miRNA:   3'- -CCUGUUgG------------ACC-GGGGUGUGaca-----CGCG- -5'
19101 5' -57 NC_004684.1 + 13707 0.66 0.656576
Target:  5'- cGGcCAACCaGGUguuccggCCCACcCgUGUGCGCc -3'
miRNA:   3'- -CCuGUUGGaCCG-------GGGUGuG-ACACGCG- -5'
19101 5' -57 NC_004684.1 + 29660 0.66 0.688513
Target:  5'- cGACGugCUccugcgcgcGGCCgaccagaCCGCGC-GUGCGCg -3'
miRNA:   3'- cCUGUugGA---------CCGG-------GGUGUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 2689 0.66 0.678968
Target:  5'- cGGGCAccgcauccccgGCCUGGCCggugCCggggGCAa-GUGCGCc -3'
miRNA:   3'- -CCUGU-----------UGGACCGG----GG----UGUgaCACGCG- -5'
19101 5' -57 NC_004684.1 + 42716 0.66 0.704325
Target:  5'- cGGCAgGCCUGGaaCCUCACcgccgucggcgaaguGCaGUGCGCg -3'
miRNA:   3'- cCUGU-UGGACC--GGGGUG---------------UGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 44891 0.66 0.657645
Target:  5'- cGGACGgaACCaggUGGCaCgUugGCgucgGUGCGCg -3'
miRNA:   3'- -CCUGU--UGG---ACCG-GgGugUGa---CACGCG- -5'
19101 5' -57 NC_004684.1 + 39773 0.66 0.69907
Target:  5'- uGGCGuCCUGGCCgUucucgauGCGCUGguagcUGCGCc -3'
miRNA:   3'- cCUGUuGGACCGGgG-------UGUGAC-----ACGCG- -5'
19101 5' -57 NC_004684.1 + 12060 0.66 0.689571
Target:  5'- cGGCucGCCUGGCCgCCGagcgcgacgaggUGCUGgcccGCGCg -3'
miRNA:   3'- cCUGu-UGGACCGG-GGU------------GUGACa---CGCG- -5'
19101 5' -57 NC_004684.1 + 9780 0.66 0.678968
Target:  5'- uGGAaGACCUcuacgccgaGGCCCUGCGCcgGUG-GCa -3'
miRNA:   3'- -CCUgUUGGA---------CCGGGGUGUGa-CACgCG- -5'
19101 5' -57 NC_004684.1 + 10562 0.66 0.656576
Target:  5'- gGGAgGcCCUGGCguucCCCGCcgauccgGCUGguucgGCGCg -3'
miRNA:   3'- -CCUgUuGGACCG----GGGUG-------UGACa----CGCG- -5'
19101 5' -57 NC_004684.1 + 27893 0.66 0.668323
Target:  5'- cGACGACaguUGGCCCgGC-CUGcGCGa -3'
miRNA:   3'- cCUGUUGg--ACCGGGgUGuGACaCGCg -5'
19101 5' -57 NC_004684.1 + 47177 0.66 0.657645
Target:  5'- cGGCGGCCagGGCCgCCGC----UGCGCg -3'
miRNA:   3'- cCUGUUGGa-CCGG-GGUGugacACGCG- -5'
19101 5' -57 NC_004684.1 + 5752 0.66 0.657645
Target:  5'- uGGACGGCCaagGGUgaCGCGgUGggGCGCa -3'
miRNA:   3'- -CCUGUUGGa--CCGggGUGUgACa-CGCG- -5'
19101 5' -57 NC_004684.1 + 7481 0.66 0.700122
Target:  5'- cGACGuuuugGCCUGGCUgguugucuaCGCGCUGgccgccGCGCg -3'
miRNA:   3'- cCUGU-----UGGACCGGg--------GUGUGACa-----CGCG- -5'
19101 5' -57 NC_004684.1 + 63431 0.66 0.657645
Target:  5'- aGGAUGACCUGGCCggGguCguccgGUGCGg -3'
miRNA:   3'- -CCUGUUGGACCGGggUguGa----CACGCg -5'
19101 5' -57 NC_004684.1 + 7687 0.66 0.667256
Target:  5'- gGGACAACCgGGCauuCCAgGCcGUcgccgugGCGCu -3'
miRNA:   3'- -CCUGUUGGaCCGg--GGUgUGaCA-------CGCG- -5'
19101 5' -57 NC_004684.1 + 63224 0.66 0.657645
Target:  5'- gGGcGCAACCgGGCCaugaucgcguCCACGgUGUccGCGCc -3'
miRNA:   3'- -CC-UGUUGGaCCGG----------GGUGUgACA--CGCG- -5'
19101 5' -57 NC_004684.1 + 3960 0.66 0.683215
Target:  5'- cGGACGACCccggccaggucauccUGGCCgguggcagcuCCAguCgaUGUGCGCc -3'
miRNA:   3'- -CCUGUUGG---------------ACCGG----------GGUguG--ACACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.