miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19101 5' -57 NC_004684.1 + 8607 1.14 0.000399
Target:  5'- gGGACAACCUGGCCCCACACUGUGCGCa -3'
miRNA:   3'- -CCUGUUGGACCGGGGUGUGACACGCG- -5'
19101 5' -57 NC_004684.1 + 10426 0.86 0.039074
Target:  5'- uGGcACAGgUUGGCCuCCACGCUGUGCGCc -3'
miRNA:   3'- -CC-UGUUgGACCGG-GGUGUGACACGCG- -5'
19101 5' -57 NC_004684.1 + 67033 0.8 0.110521
Target:  5'- cGAUGGCCUGGCCaCCGaGCUGcUGCGCa -3'
miRNA:   3'- cCUGUUGGACCGG-GGUgUGAC-ACGCG- -5'
19101 5' -57 NC_004684.1 + 50930 0.78 0.137445
Target:  5'- cGGACAGCCcGGCCUCguccaggcGCACgaugGUGUGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGGG--------UGUGa---CACGCG- -5'
19101 5' -57 NC_004684.1 + 40653 0.76 0.189197
Target:  5'- uGGgGGCCUGGCCCCGC-CaGUcGCGCu -3'
miRNA:   3'- cCUgUUGGACCGGGGUGuGaCA-CGCG- -5'
19101 5' -57 NC_004684.1 + 23566 0.75 0.215428
Target:  5'- gGGACGaguACCUGGCgaCCuCGCUGcGCGCg -3'
miRNA:   3'- -CCUGU---UGGACCGg-GGuGUGACaCGCG- -5'
19101 5' -57 NC_004684.1 + 19842 0.74 0.244714
Target:  5'- cGACAACaucgUGGCCCUGCGCgaUGCGCu -3'
miRNA:   3'- cCUGUUGg---ACCGGGGUGUGacACGCG- -5'
19101 5' -57 NC_004684.1 + 57009 0.74 0.244714
Target:  5'- uGGCGGCCUGGUaCCCG-GCgGUGCGCg -3'
miRNA:   3'- cCUGUUGGACCG-GGGUgUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 30950 0.74 0.250954
Target:  5'- cGACGACCUGGaCUCGCugUGgaacgGCGUg -3'
miRNA:   3'- cCUGUUGGACCgGGGUGugACa----CGCG- -5'
19101 5' -57 NC_004684.1 + 65736 0.74 0.270463
Target:  5'- gGGAguCGAgCUGGCCCCAC-UUGgGCGCc -3'
miRNA:   3'- -CCU--GUUgGACCGGGGUGuGACaCGCG- -5'
19101 5' -57 NC_004684.1 + 56876 0.73 0.284135
Target:  5'- -cGCAcCCUGGCCCCGCACcuUG-GCGa -3'
miRNA:   3'- ccUGUuGGACCGGGGUGUG--ACaCGCg -5'
19101 5' -57 NC_004684.1 + 29215 0.73 0.284135
Target:  5'- gGGACGGCaacGGCCaggaCAUGCUGUGgCGCg -3'
miRNA:   3'- -CCUGUUGga-CCGGg---GUGUGACAC-GCG- -5'
19101 5' -57 NC_004684.1 + 34849 0.73 0.284135
Target:  5'- -uGCAGCCgugggcGGUUCCGCGCguUGUGCGCg -3'
miRNA:   3'- ccUGUUGGa-----CCGGGGUGUG--ACACGCG- -5'
19101 5' -57 NC_004684.1 + 44772 0.73 0.291173
Target:  5'- cGGCGACCgucggGGCCCCGCcacgaguCUGUgaGUGCg -3'
miRNA:   3'- cCUGUUGGa----CCGGGGUGu------GACA--CGCG- -5'
19101 5' -57 NC_004684.1 + 7961 0.73 0.305658
Target:  5'- cGGugGGCaaGGCCgCCAgGCggccGUGCGCa -3'
miRNA:   3'- -CCugUUGgaCCGG-GGUgUGa---CACGCG- -5'
19101 5' -57 NC_004684.1 + 6791 0.73 0.305658
Target:  5'- cGGGUGACC-GGCCUgCGCACcGUGCGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGG-GUGUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 14861 0.73 0.305658
Target:  5'- cGGACAccuCCUGGCUCCACACcG-GCu- -3'
miRNA:   3'- -CCUGUu--GGACCGGGGUGUGaCaCGcg -5'
19101 5' -57 NC_004684.1 + 66346 0.72 0.333895
Target:  5'- -cACAACCggugccgccauuucUGGCCCCACGCcGcgagcUGCGCg -3'
miRNA:   3'- ccUGUUGG--------------ACCGGGGUGUGaC-----ACGCG- -5'
19101 5' -57 NC_004684.1 + 623 0.72 0.334684
Target:  5'- uGGACGACCUGGCcgacgagcacggcgaCCCcaaggacaccgacgcGCACgacagcGUGCGCc -3'
miRNA:   3'- -CCUGUUGGACCG---------------GGG---------------UGUGa-----CACGCG- -5'
19101 5' -57 NC_004684.1 + 63516 0.72 0.335475
Target:  5'- aGGGCGGCCUGGCgUCGCAgCUcgcgggcGUGgCGCu -3'
miRNA:   3'- -CCUGUUGGACCGgGGUGU-GA-------CAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.