miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19101 5' -57 NC_004684.1 + 13179 0.66 0.667256
Target:  5'- uGGcCGACCUcGGCCCCGagcaggcCGCcgGUuuGCGCc -3'
miRNA:   3'- -CCuGUUGGA-CCGGGGU-------GUGa-CA--CGCG- -5'
19101 5' -57 NC_004684.1 + 29792 0.66 0.657645
Target:  5'- uGGGCGGCC-GGgCCCGCACgGUaccgaugccGgGCa -3'
miRNA:   3'- -CCUGUUGGaCCgGGGUGUGaCA---------CgCG- -5'
19101 5' -57 NC_004684.1 + 5752 0.66 0.657645
Target:  5'- uGGACGGCCaagGGUgaCGCGgUGggGCGCa -3'
miRNA:   3'- -CCUGUUGGa--CCGggGUGUgACa-CGCG- -5'
19101 5' -57 NC_004684.1 + 44891 0.66 0.657645
Target:  5'- cGGACGgaACCaggUGGCaCgUugGCgucgGUGCGCg -3'
miRNA:   3'- -CCUGU--UGG---ACCG-GgGugUGa---CACGCG- -5'
19101 5' -57 NC_004684.1 + 47177 0.66 0.657645
Target:  5'- cGGCGGCCagGGCCgCCGC----UGCGCg -3'
miRNA:   3'- cCUGUUGGa-CCGG-GGUGugacACGCG- -5'
19101 5' -57 NC_004684.1 + 63431 0.66 0.657645
Target:  5'- aGGAUGACCUGGCCggGguCguccgGUGCGg -3'
miRNA:   3'- -CCUGUUGGACCGGggUguGa----CACGCg -5'
19101 5' -57 NC_004684.1 + 63224 0.66 0.657645
Target:  5'- gGGcGCAACCgGGCCaugaucgcguCCACGgUGUccGCGCc -3'
miRNA:   3'- -CC-UGUUGGaCCGG----------GGUGUgACA--CGCG- -5'
19101 5' -57 NC_004684.1 + 10562 0.66 0.656576
Target:  5'- gGGAgGcCCUGGCguucCCCGCcgauccgGCUGguucgGCGCg -3'
miRNA:   3'- -CCUgUuGGACCG----GGGUG-------UGACa----CGCG- -5'
19101 5' -57 NC_004684.1 + 13707 0.66 0.656576
Target:  5'- cGGcCAACCaGGUguuccggCCCACcCgUGUGCGCc -3'
miRNA:   3'- -CCuGUUGGaCCG-------GGGUGuG-ACACGCG- -5'
19101 5' -57 NC_004684.1 + 5033 0.67 0.646945
Target:  5'- cGACGACgaGGUgCgCAgGCUG-GCGCg -3'
miRNA:   3'- cCUGUUGgaCCGgG-GUgUGACaCGCG- -5'
19101 5' -57 NC_004684.1 + 3947 0.67 0.646945
Target:  5'- uGGGCGGCgaaGGCgaCCACGCUGUcGUGUc -3'
miRNA:   3'- -CCUGUUGga-CCGg-GGUGUGACA-CGCG- -5'
19101 5' -57 NC_004684.1 + 7559 0.67 0.646945
Target:  5'- ---gGACC-GGCCCCgggugGCGCUG-GUGCg -3'
miRNA:   3'- ccugUUGGaCCGGGG-----UGUGACaCGCG- -5'
19101 5' -57 NC_004684.1 + 28428 0.67 0.646945
Target:  5'- uGGugGucgaCUGGCaUgACAUUGUGCGCc -3'
miRNA:   3'- -CCugUug--GACCGgGgUGUGACACGCG- -5'
19101 5' -57 NC_004684.1 + 37757 0.67 0.646945
Target:  5'- uGGCggUUUGGCuCCCAuCGCgGUGCaGCu -3'
miRNA:   3'- cCUGuuGGACCG-GGGU-GUGaCACG-CG- -5'
19101 5' -57 NC_004684.1 + 57819 0.67 0.636232
Target:  5'- -cACGGCCUGGUCCCG-GCgGUGCu- -3'
miRNA:   3'- ccUGUUGGACCGGGGUgUGaCACGcg -5'
19101 5' -57 NC_004684.1 + 19514 0.67 0.636232
Target:  5'- gGGACGGCacgcaCUGGCUCaACGCcagcugcggGUGCGCc -3'
miRNA:   3'- -CCUGUUG-----GACCGGGgUGUGa--------CACGCG- -5'
19101 5' -57 NC_004684.1 + 55376 0.67 0.636232
Target:  5'- uGACAAgCUGGCCCggauCGCGCcGgaaaccuucgcUGCGCu -3'
miRNA:   3'- cCUGUUgGACCGGG----GUGUGaC-----------ACGCG- -5'
19101 5' -57 NC_004684.1 + 57101 0.67 0.636232
Target:  5'- cGGGCGACCucUGGCgCgACACcG-GCGUc -3'
miRNA:   3'- -CCUGUUGG--ACCGgGgUGUGaCaCGCG- -5'
19101 5' -57 NC_004684.1 + 17093 0.67 0.636232
Target:  5'- uGGGCAcgcgugaagucGCCgucgGGCCUgGCGCUGgccaGCGa -3'
miRNA:   3'- -CCUGU-----------UGGa---CCGGGgUGUGACa---CGCg -5'
19101 5' -57 NC_004684.1 + 31756 0.67 0.625515
Target:  5'- aGGaACGACUcGGCCaCCACGCgcggaaaguaGUGcCGCg -3'
miRNA:   3'- -CC-UGUUGGaCCGG-GGUGUGa---------CAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.