miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19101 5' -57 NC_004684.1 + 623 0.72 0.334684
Target:  5'- uGGACGACCUGGCcgacgagcacggcgaCCCcaaggacaccgacgcGCACgacagcGUGCGCc -3'
miRNA:   3'- -CCUGUUGGACCG---------------GGG---------------UGUGa-----CACGCG- -5'
19101 5' -57 NC_004684.1 + 715 0.69 0.498637
Target:  5'- uGGACGGCCUGGCgcuccaacuaCCCcgacgacaccgacGCcCUGgcgGCGCu -3'
miRNA:   3'- -CCUGUUGGACCG----------GGG-------------UGuGACa--CGCG- -5'
19101 5' -57 NC_004684.1 + 1504 0.66 0.678968
Target:  5'- uGGcCAACCUGcGCgCCGCGCUcaacgGCGa -3'
miRNA:   3'- -CCuGUUGGAC-CGgGGUGUGAca---CGCg -5'
19101 5' -57 NC_004684.1 + 2506 0.71 0.413006
Target:  5'- aGGGCGGCCUcaacgacGCCCgGCACUGcgGaCGCu -3'
miRNA:   3'- -CCUGUUGGAc------CGGGgUGUGACa-C-GCG- -5'
19101 5' -57 NC_004684.1 + 2689 0.66 0.678968
Target:  5'- cGGGCAccgcauccccgGCCUGGCCggugCCggggGCAa-GUGCGCc -3'
miRNA:   3'- -CCUGU-----------UGGACCGG----GG----UGUgaCACGCG- -5'
19101 5' -57 NC_004684.1 + 3947 0.67 0.646945
Target:  5'- uGGGCGGCgaaGGCgaCCACGCUGUcGUGUc -3'
miRNA:   3'- -CCUGUUGga-CCGg-GGUGUGACA-CGCG- -5'
19101 5' -57 NC_004684.1 + 3960 0.66 0.683215
Target:  5'- cGGACGACCccggccaggucauccUGGCCgguggcagcuCCAguCgaUGUGCGCc -3'
miRNA:   3'- -CCUGUUGG---------------ACCGG----------GGUguG--ACACGCG- -5'
19101 5' -57 NC_004684.1 + 4824 0.68 0.56163
Target:  5'- aGGACAAgCUcGGCCUgAaGCUGgagcgugGCGCg -3'
miRNA:   3'- -CCUGUUgGA-CCGGGgUgUGACa------CGCG- -5'
19101 5' -57 NC_004684.1 + 5012 0.68 0.565847
Target:  5'- aGGugGACCuguggauggcaacggUGGCCaCCACGCgucUGgcacccgGCGCu -3'
miRNA:   3'- -CCugUUGG---------------ACCGG-GGUGUG---ACa------CGCG- -5'
19101 5' -57 NC_004684.1 + 5033 0.67 0.646945
Target:  5'- cGACGACgaGGUgCgCAgGCUG-GCGCg -3'
miRNA:   3'- cCUGUUGgaCCGgG-GUgUGACaCGCG- -5'
19101 5' -57 NC_004684.1 + 5371 0.7 0.469795
Target:  5'- --uCAACCccgUGGCCCCcguccccgucGCgAUUGUGCGCg -3'
miRNA:   3'- ccuGUUGG---ACCGGGG----------UG-UGACACGCG- -5'
19101 5' -57 NC_004684.1 + 5752 0.66 0.657645
Target:  5'- uGGACGGCCaagGGUgaCGCGgUGggGCGCa -3'
miRNA:   3'- -CCUGUUGGa--CCGggGUGUgACa-CGCG- -5'
19101 5' -57 NC_004684.1 + 5950 0.68 0.56163
Target:  5'- cGGucCAACCUGGCCgCGC-CgGUGaGCg -3'
miRNA:   3'- -CCu-GUUGGACCGGgGUGuGaCACgCG- -5'
19101 5' -57 NC_004684.1 + 6234 0.71 0.377582
Target:  5'- uGGGCGGCCaGGCCUUcgacggugAUGCaGUGCGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGGG--------UGUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 6620 0.67 0.604108
Target:  5'- cGGAacCGGCCUGGCcagggccgugcuCCCugAC-GUGCaGCg -3'
miRNA:   3'- -CCU--GUUGGACCG------------GGGugUGaCACG-CG- -5'
19101 5' -57 NC_004684.1 + 6694 0.67 0.625515
Target:  5'- aGGuCGACCUGGCCaCCGucg---GCGCg -3'
miRNA:   3'- -CCuGUUGGACCGG-GGUgugacaCGCG- -5'
19101 5' -57 NC_004684.1 + 6791 0.73 0.305658
Target:  5'- cGGGUGACC-GGCCUgCGCACcGUGCGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGG-GUGUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 7329 0.69 0.479647
Target:  5'- cGGGCcGCCgGGCCgCGCGCcacgaGUGCGa -3'
miRNA:   3'- -CCUGuUGGaCCGGgGUGUGa----CACGCg -5'
19101 5' -57 NC_004684.1 + 7481 0.66 0.700122
Target:  5'- cGACGuuuugGCCUGGCUgguugucuaCGCGCUGgccgccGCGCg -3'
miRNA:   3'- cCUGU-----UGGACCGGg--------GUGUGACa-----CGCG- -5'
19101 5' -57 NC_004684.1 + 7559 0.67 0.646945
Target:  5'- ---gGACC-GGCCCCgggugGCGCUG-GUGCg -3'
miRNA:   3'- ccugUUGGaCCGGGG-----UGUGACaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.