miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19101 5' -57 NC_004684.1 + 29356 0.71 0.413006
Target:  5'- cGGugGACCUGuccGUCCC-CGCUGagGCGUu -3'
miRNA:   3'- -CCugUUGGAC---CGGGGuGUGACa-CGCG- -5'
19101 5' -57 NC_004684.1 + 35454 0.71 0.376722
Target:  5'- cGGGCGACCguugcGGCCgggCCGCgACUGUccgaacuGCGCa -3'
miRNA:   3'- -CCUGUUGGa----CCGG---GGUG-UGACA-------CGCG- -5'
19101 5' -57 NC_004684.1 + 6234 0.71 0.377582
Target:  5'- uGGGCGGCCaGGCCUUcgacggugAUGCaGUGCGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGGG--------UGUGaCACGCG- -5'
19101 5' -57 NC_004684.1 + 39821 0.71 0.377582
Target:  5'- cGGACAgguGCUUGGCCauaCCGCGCUG-GCu- -3'
miRNA:   3'- -CCUGU---UGGACCGG---GGUGUGACaCGcg -5'
19101 5' -57 NC_004684.1 + 60040 0.71 0.386244
Target:  5'- -aGCAucuGCCaGGCCUCGCACUcGUGgCGCg -3'
miRNA:   3'- ccUGU---UGGaCCGGGGUGUGA-CAC-GCG- -5'
19101 5' -57 NC_004684.1 + 64225 0.71 0.386244
Target:  5'- gGGACAcggcguugGCCUcGGCCagGCGCUGgguguugGCGCa -3'
miRNA:   3'- -CCUGU--------UGGA-CCGGggUGUGACa------CGCG- -5'
19101 5' -57 NC_004684.1 + 59437 0.71 0.395037
Target:  5'- uGGCGGCCUuGCCCaC-CGgUGUGCGCc -3'
miRNA:   3'- cCUGUUGGAcCGGG-GuGUgACACGCG- -5'
19101 5' -57 NC_004684.1 + 46461 0.71 0.403959
Target:  5'- cGGugGGCCagGGCCaCCACGCgcuUGcCGCu -3'
miRNA:   3'- -CCugUUGGa-CCGG-GGUGUGac-AC-GCG- -5'
19101 5' -57 NC_004684.1 + 2506 0.71 0.413006
Target:  5'- aGGGCGGCCUcaacgacGCCCgGCACUGcgGaCGCu -3'
miRNA:   3'- -CCUGUUGGAc------CGGGgUGUGACa-C-GCG- -5'
19101 5' -57 NC_004684.1 + 31214 0.72 0.352389
Target:  5'- aGACGACCUGG-CCgACGCcgGUGaCGCc -3'
miRNA:   3'- cCUGUUGGACCgGGgUGUGa-CAC-GCG- -5'
19101 5' -57 NC_004684.1 + 15507 0.72 0.34426
Target:  5'- uGGACAagGCCgcccggGGCCggGCGCUGgagGCGCu -3'
miRNA:   3'- -CCUGU--UGGa-----CCGGggUGUGACa--CGCG- -5'
19101 5' -57 NC_004684.1 + 63516 0.72 0.335475
Target:  5'- aGGGCGGCCUGGCgUCGCAgCUcgcgggcGUGgCGCu -3'
miRNA:   3'- -CCUGUUGGACCGgGGUGU-GA-------CAC-GCG- -5'
19101 5' -57 NC_004684.1 + 50930 0.78 0.137445
Target:  5'- cGGACAGCCcGGCCUCguccaggcGCACgaugGUGUGCg -3'
miRNA:   3'- -CCUGUUGGaCCGGGG--------UGUGa---CACGCG- -5'
19101 5' -57 NC_004684.1 + 40653 0.76 0.189197
Target:  5'- uGGgGGCCUGGCCCCGC-CaGUcGCGCu -3'
miRNA:   3'- cCUgUUGGACCGGGGUGuGaCA-CGCG- -5'
19101 5' -57 NC_004684.1 + 30950 0.74 0.250954
Target:  5'- cGACGACCUGGaCUCGCugUGgaacgGCGUg -3'
miRNA:   3'- cCUGUUGGACCgGGGUGugACa----CGCG- -5'
19101 5' -57 NC_004684.1 + 34849 0.73 0.284135
Target:  5'- -uGCAGCCgugggcGGUUCCGCGCguUGUGCGCg -3'
miRNA:   3'- ccUGUUGGa-----CCGGGGUGUG--ACACGCG- -5'
19101 5' -57 NC_004684.1 + 29215 0.73 0.284135
Target:  5'- gGGACGGCaacGGCCaggaCAUGCUGUGgCGCg -3'
miRNA:   3'- -CCUGUUGga-CCGGg---GUGUGACAC-GCG- -5'
19101 5' -57 NC_004684.1 + 56876 0.73 0.284135
Target:  5'- -cGCAcCCUGGCCCCGCACcuUG-GCGa -3'
miRNA:   3'- ccUGUuGGACCGGGGUGUG--ACaCGCg -5'
19101 5' -57 NC_004684.1 + 44772 0.73 0.291173
Target:  5'- cGGCGACCgucggGGCCCCGCcacgaguCUGUgaGUGCg -3'
miRNA:   3'- cCUGUUGGa----CCGGGGUGu------GACA--CGCG- -5'
19101 5' -57 NC_004684.1 + 623 0.72 0.334684
Target:  5'- uGGACGACCUGGCcgacgagcacggcgaCCCcaaggacaccgacgcGCACgacagcGUGCGCc -3'
miRNA:   3'- -CCUGUUGGACCG---------------GGG---------------UGUGa-----CACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.