miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 3' -60.1 NC_004684.1 + 8936 0.66 0.480238
Target:  5'- cGCUGGCcucaGCgggcagucgGGUCCGGCacGggGCCGGAg -3'
miRNA:   3'- uUGACCG----CG---------UCAGGCCG--CuaCGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 63915 0.66 0.480238
Target:  5'- ---cGGUGCGGcCCGGCGugGCUGAGc -3'
miRNA:   3'- uugaCCGCGUCaGGCCGCuaCGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 5228 0.66 0.460558
Target:  5'- ---aGGCcauGguGUCCGcGCGcgGCCGAAc -3'
miRNA:   3'- uugaCCG---CguCAGGC-CGCuaCGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 64185 0.66 0.460558
Target:  5'- ---aGGCGCAcgUCGGCGuUGCCGGu -3'
miRNA:   3'- uugaCCGCGUcaGGCCGCuACGGCUu -5'
19102 3' -60.1 NC_004684.1 + 51552 0.66 0.45088
Target:  5'- ---cGGCGUgcgucGGUgUGGCGAUGCCGc- -3'
miRNA:   3'- uugaCCGCG-----UCAgGCCGCUACGGCuu -5'
19102 3' -60.1 NC_004684.1 + 30508 0.66 0.450879
Target:  5'- cGGCUGGCGCuGgggUCGGUGAaguucaccGCCGAc -3'
miRNA:   3'- -UUGACCGCGuCa--GGCCGCUa-------CGGCUu -5'
19102 3' -60.1 NC_004684.1 + 54192 0.66 0.450879
Target:  5'- cAGCaGGCGCAaaCCGGCGGccugcucgggGCCGAGg -3'
miRNA:   3'- -UUGaCCGCGUcaGGCCGCUa---------CGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 18952 0.66 0.450879
Target:  5'- ---cGGCGCAGgaugCCaGcGCGGUGUCGAu -3'
miRNA:   3'- uugaCCGCGUCa---GG-C-CGCUACGGCUu -5'
19102 3' -60.1 NC_004684.1 + 35796 0.66 0.450879
Target:  5'- --gUGGCGCAGUccCCGGCGAcGgUGGu -3'
miRNA:   3'- uugACCGCGUCA--GGCCGCUaCgGCUu -5'
19102 3' -60.1 NC_004684.1 + 9253 0.66 0.448957
Target:  5'- cGCUGGCGguGcucauccccgagCUGGcCGAUGUCGAGu -3'
miRNA:   3'- uUGACCGCguCa-----------GGCC-GCUACGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 57006 0.66 0.441314
Target:  5'- cGCUGGCgGCcuGGUacCCGGCGGUGCgCGc- -3'
miRNA:   3'- uUGACCG-CG--UCA--GGCCGCUACG-GCuu -5'
19102 3' -60.1 NC_004684.1 + 16348 0.66 0.441313
Target:  5'- cGGCUGGCGCuGgccgacaagCUGGCG--GCCGAGu -3'
miRNA:   3'- -UUGACCGCGuCa--------GGCCGCuaCGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 38115 0.67 0.426251
Target:  5'- gAGCUGGUgauggugagcugucgGCGGUCggCGGUGAUGCCu-- -3'
miRNA:   3'- -UUGACCG---------------CGUCAG--GCCGCUACGGcuu -5'
19102 3' -60.1 NC_004684.1 + 27844 0.67 0.422533
Target:  5'- ---cGGUGCuGUCCGGCGAggauuagGCCu-- -3'
miRNA:   3'- uugaCCGCGuCAGGCCGCUa------CGGcuu -5'
19102 3' -60.1 NC_004684.1 + 26907 0.67 0.422533
Target:  5'- uGCUGGCGCAc-UCGGCGcagaccGCCGAGa -3'
miRNA:   3'- uUGACCGCGUcaGGCCGCua----CGGCUU- -5'
19102 3' -60.1 NC_004684.1 + 51675 0.67 0.413325
Target:  5'- uGCUGGuCGguGucUCCGGgagcaCGAUGCCGGu -3'
miRNA:   3'- uUGACC-GCguC--AGGCC-----GCUACGGCUu -5'
19102 3' -60.1 NC_004684.1 + 24156 0.67 0.404241
Target:  5'- cGCUccGGUGCagGGUCCgcaGGCGGUGCCGc- -3'
miRNA:   3'- uUGA--CCGCG--UCAGG---CCGCUACGGCuu -5'
19102 3' -60.1 NC_004684.1 + 33349 0.67 0.404241
Target:  5'- ---cGGUGCAGUCCGGCcucGCCa-- -3'
miRNA:   3'- uugaCCGCGUCAGGCCGcuaCGGcuu -5'
19102 3' -60.1 NC_004684.1 + 64943 0.67 0.404241
Target:  5'- gAGCUGGCcgccCAGgCgGGCGAUGUCGGc -3'
miRNA:   3'- -UUGACCGc---GUCaGgCCGCUACGGCUu -5'
19102 3' -60.1 NC_004684.1 + 41599 0.67 0.395285
Target:  5'- -cCUGGCGCaggucggccacgAGUCCGGCG--GCCuGAAa -3'
miRNA:   3'- uuGACCGCG------------UCAGGCCGCuaCGG-CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.