miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 24838 0.66 0.354537
Target:  5'- cAGgGCGGCAGCgguaGCGccACcGGGCCg -3'
miRNA:   3'- -UCgCGCCGUCGagc-CGCc-UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 55723 0.66 0.354537
Target:  5'- uGCGCGGCGGUcacgUUGGCcgccgugcuGGCGuGGCCg -3'
miRNA:   3'- uCGCGCCGUCG----AGCCGc--------CUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 19763 0.66 0.354537
Target:  5'- uGCGCGGCcuGC-CGGUgcccgccggGGGCGacaagauggcGGGCCu -3'
miRNA:   3'- uCGCGCCGu-CGaGCCG---------CCUGU----------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 13979 0.66 0.353749
Target:  5'- cGCGCGGCgcaggccAGCcCGGCcaccuggacacGGuGCAGuGGCCc -3'
miRNA:   3'- uCGCGCCG-------UCGaGCCG-----------CC-UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 52504 0.66 0.346711
Target:  5'- aGGUGUccaGGUUCuGCGGACGGGuGCCg -3'
miRNA:   3'- -UCGCGccgUCGAGcCGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 55834 0.66 0.346711
Target:  5'- -uCGCGGUAGCcgCuGUGGuuGCGGGGCg -3'
miRNA:   3'- ucGCGCCGUCGa-GcCGCC--UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 4979 0.66 0.346711
Target:  5'- uGCGCaccuggGGCAGCgCGa-GGGCaAGGGCCc -3'
miRNA:   3'- uCGCG------CCGUCGaGCcgCCUG-UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 8159 0.66 0.346711
Target:  5'- cGUGCGGgucugcggguCAcGCUCGGCGGAaacGGUCa -3'
miRNA:   3'- uCGCGCC----------GU-CGAGCCGCCUgucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 8976 0.66 0.346711
Target:  5'- aGGCaaCGGCggGGUUcCGGCGG-CcGGGCCa -3'
miRNA:   3'- -UCGc-GCCG--UCGA-GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43107 0.66 0.346711
Target:  5'- cGCcuucCGGCAGCUCGGUGauuuCGGuGGCg -3'
miRNA:   3'- uCGc---GCCGUCGAGCCGCcu--GUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 43858 0.66 0.345935
Target:  5'- aGGCGCaucGGCAGCaugugcgccauguUCGGCgcaucgcuGGGCAGGuggaugacacgGCCa -3'
miRNA:   3'- -UCGCG---CCGUCG-------------AGCCG--------CCUGUCC-----------CGG- -5'
19102 5' -64.2 NC_004684.1 + 12768 0.66 0.339009
Target:  5'- cGCGCGGCuGCgccugCGGCcaacgaGGACAacGGCa -3'
miRNA:   3'- uCGCGCCGuCGa----GCCG------CCUGUc-CCGg -5'
19102 5' -64.2 NC_004684.1 + 63220 0.66 0.339009
Target:  5'- cGGCcacCGGCGGCUCGuugcCGGGCGucGGCCc -3'
miRNA:   3'- -UCGc--GCCGUCGAGCc---GCCUGUc-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 41436 0.66 0.339009
Target:  5'- cAGCuuGGcCAGCUCGGCGuu--GGGCa -3'
miRNA:   3'- -UCGcgCC-GUCGAGCCGCcuguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 22192 0.66 0.339009
Target:  5'- cGCGCuGCcGCUgGaGCGcGGCGGGGUg -3'
miRNA:   3'- uCGCGcCGuCGAgC-CGC-CUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 57255 0.66 0.334448
Target:  5'- cGgGCGGCaccgucggcccgcacAGCUCGGCcuguGACGGcGaGCCg -3'
miRNA:   3'- uCgCGCCG---------------UCGAGCCGc---CUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 65831 0.66 0.331432
Target:  5'- aGGCGCaccauCAGCaggCGGuuGugGGGGCCg -3'
miRNA:   3'- -UCGCGcc---GUCGa--GCCgcCugUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 12018 0.66 0.331432
Target:  5'- -uCGCGGCGGC--GGUGGcCAaGGCCa -3'
miRNA:   3'- ucGCGCCGUCGagCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 18890 0.66 0.331432
Target:  5'- cAGCGCGGCucCUCcacGUcGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGucGAGc--CGcCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 59866 0.66 0.331432
Target:  5'- --gGCGGcCAGgUCGGUccGGGCAGGuCCa -3'
miRNA:   3'- ucgCGCC-GUCgAGCCG--CCUGUCCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.