miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 18890 0.66 0.331432
Target:  5'- cAGCGCGGCucCUCcacGUcGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGucGAGc--CGcCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66265 0.66 0.331432
Target:  5'- cAGCGCGGCG--UCGucccaGCGGAC--GGCCa -3'
miRNA:   3'- -UCGCGCCGUcgAGC-----CGCCUGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 59866 0.66 0.331432
Target:  5'- --gGCGGcCAGgUCGGUccGGGCAGGuCCa -3'
miRNA:   3'- ucgCGCC-GUCgAGCCG--CCUGUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 63220 0.66 0.339009
Target:  5'- cGGCcacCGGCGGCUCGuugcCGGGCGucGGCCc -3'
miRNA:   3'- -UCGc--GCCGUCGAGCc---GCCUGUc-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 22279 0.66 0.316655
Target:  5'- uGGCgGCGGCcaaGGCccgcgCGGCGG-CGGuGCCg -3'
miRNA:   3'- -UCG-CGCCG---UCGa----GCCGCCuGUCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 12018 0.66 0.331432
Target:  5'- -uCGCGGCGGC--GGUGGcCAaGGCCa -3'
miRNA:   3'- ucGCGCCGUCGagCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 55723 0.66 0.354537
Target:  5'- uGCGCGGCGGUcacgUUGGCcgccgugcuGGCGuGGCCg -3'
miRNA:   3'- uCGCGCCGUCG----AGCCGc--------CUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43858 0.66 0.345935
Target:  5'- aGGCGCaucGGCAGCaugugcgccauguUCGGCgcaucgcuGGGCAGGuggaugacacgGCCa -3'
miRNA:   3'- -UCGCG---CCGUCG-------------AGCCG--------CCUGUCC-----------CGG- -5'
19102 5' -64.2 NC_004684.1 + 30498 0.66 0.331432
Target:  5'- gAGCGUggGGCGGCU-GGCGcu-GGGGUCg -3'
miRNA:   3'- -UCGCG--CCGUCGAgCCGCcugUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 12768 0.66 0.339009
Target:  5'- cGCGCGGCuGCgccugCGGCcaacgaGGACAacGGCa -3'
miRNA:   3'- uCGCGCCGuCGa----GCCG------CCUGUc-CCGg -5'
19102 5' -64.2 NC_004684.1 + 49036 0.66 0.323981
Target:  5'- cGGCGCaGGCuccuccucCUCGGCaGGCucGGCCa -3'
miRNA:   3'- -UCGCG-CCGuc------GAGCCGcCUGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 49547 0.66 0.309455
Target:  5'- uGCGCGGUGGCcgacuUCgGGCuGGCGuGGCCu -3'
miRNA:   3'- uCGCGCCGUCG-----AG-CCGcCUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 19763 0.66 0.354537
Target:  5'- uGCGCGGCcuGC-CGGUgcccgccggGGGCGacaagauggcGGGCCu -3'
miRNA:   3'- uCGCGCCGu-CGaGCCG---------CCUGU----------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 26583 0.66 0.309455
Target:  5'- cGCGCGGCGGUgUGcGCGGguucgccaccgGCGGcGGCg -3'
miRNA:   3'- uCGCGCCGUCGaGC-CGCC-----------UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 22143 0.66 0.316655
Target:  5'- cAGCGCGGCAuccaUGGCaucaccgaGGagcaccGCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUcga-GCCG--------CC------UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 63839 0.66 0.323981
Target:  5'- uGGCGCGGCGcacGCUgucggugccacgUGcGCGGugGcGGCCu -3'
miRNA:   3'- -UCGCGCCGU---CGA------------GC-CGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 28043 0.66 0.329184
Target:  5'- gAGCGCgagaucaugccgguGGuCGGCccCGGCGGugugGCcGGGCCg -3'
miRNA:   3'- -UCGCG--------------CC-GUCGa-GCCGCC----UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 13979 0.66 0.353749
Target:  5'- cGCGCGGCgcaggccAGCcCGGCcaccuggacacGGuGCAGuGGCCc -3'
miRNA:   3'- uCGCGCCG-------UCGaGCCG-----------CC-UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 26641 0.66 0.316655
Target:  5'- cGGCGCGG-AGUucuUCGGgguguCGGAggugccgauccuCGGGGCCa -3'
miRNA:   3'- -UCGCGCCgUCG---AGCC-----GCCU------------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57255 0.66 0.334448
Target:  5'- cGgGCGGCaccgucggcccgcacAGCUCGGCcuguGACGGcGaGCCg -3'
miRNA:   3'- uCgCGCCG---------------UCGAGCCGc---CUGUC-C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.