Results 21 - 40 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19102 | 5' | -64.2 | NC_004684.1 | + | 30498 | 0.66 | 0.331432 |
Target: 5'- gAGCGUggGGCGGCU-GGCGcu-GGGGUCg -3' miRNA: 3'- -UCGCG--CCGUCGAgCCGCcugUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 63839 | 0.66 | 0.323981 |
Target: 5'- uGGCGCGGCGcacGCUgucggugccacgUGcGCGGugGcGGCCu -3' miRNA: 3'- -UCGCGCCGU---CGA------------GC-CGCCugUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 57255 | 0.66 | 0.334448 |
Target: 5'- cGgGCGGCaccgucggcccgcacAGCUCGGCcuguGACGGcGaGCCg -3' miRNA: 3'- uCgCGCCG---------------UCGAGCCGc---CUGUC-C-CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 49036 | 0.66 | 0.323981 |
Target: 5'- cGGCGCaGGCuccuccucCUCGGCaGGCucGGCCa -3' miRNA: 3'- -UCGCG-CCGuc------GAGCCGcCUGucCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 43858 | 0.66 | 0.345935 |
Target: 5'- aGGCGCaucGGCAGCaugugcgccauguUCGGCgcaucgcuGGGCAGGuggaugacacgGCCa -3' miRNA: 3'- -UCGCG---CCGUCG-------------AGCCG--------CCUGUCC-----------CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 22192 | 0.66 | 0.339009 |
Target: 5'- cGCGCuGCcGCUgGaGCGcGGCGGGGUg -3' miRNA: 3'- uCGCGcCGuCGAgC-CGC-CUGUCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 63220 | 0.66 | 0.339009 |
Target: 5'- cGGCcacCGGCGGCUCGuugcCGGGCGucGGCCc -3' miRNA: 3'- -UCGc--GCCGUCGAGCc---GCCUGUc-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 24499 | 0.66 | 0.316655 |
Target: 5'- cAG-GUGGCGGuCUCGGUGc-CAGaGGCCg -3' miRNA: 3'- -UCgCGCCGUC-GAGCCGCcuGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 26641 | 0.66 | 0.316655 |
Target: 5'- cGGCGCGG-AGUucuUCGGgguguCGGAggugccgauccuCGGGGCCa -3' miRNA: 3'- -UCGCGCCgUCG---AGCC-----GCCU------------GUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 19763 | 0.66 | 0.354537 |
Target: 5'- uGCGCGGCcuGC-CGGUgcccgccggGGGCGacaagauggcGGGCCu -3' miRNA: 3'- uCGCGCCGu-CGaGCCG---------CCUGU----------CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 24838 | 0.66 | 0.354537 |
Target: 5'- cAGgGCGGCAGCgguaGCGccACcGGGCCg -3' miRNA: 3'- -UCgCGCCGUCGagc-CGCc-UGuCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 12768 | 0.66 | 0.339009 |
Target: 5'- cGCGCGGCuGCgccugCGGCcaacgaGGACAacGGCa -3' miRNA: 3'- uCGCGCCGuCGa----GCCG------CCUGUc-CCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 55834 | 0.66 | 0.346711 |
Target: 5'- -uCGCGGUAGCcgCuGUGGuuGCGGGGCg -3' miRNA: 3'- ucGCGCCGUCGa-GcCGCC--UGUCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 13979 | 0.66 | 0.353749 |
Target: 5'- cGCGCGGCgcaggccAGCcCGGCcaccuggacacGGuGCAGuGGCCc -3' miRNA: 3'- uCGCGCCG-------UCGaGCCG-----------CC-UGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 52504 | 0.66 | 0.346711 |
Target: 5'- aGGUGUccaGGUUCuGCGGACGGGuGCCg -3' miRNA: 3'- -UCGCGccgUCGAGcCGCCUGUCC-CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 58756 | 0.67 | 0.287929 |
Target: 5'- cGGCGgGGguGCcgaggaUCGGCGGugccgguGCAccGGGCUu -3' miRNA: 3'- -UCGCgCCguCG------AGCCGCC-------UGU--CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 24107 | 0.67 | 0.286582 |
Target: 5'- cGCGCGGCaucgccaaggacguGGUgcgCGGCG-ACAuGGCCg -3' miRNA: 3'- uCGCGCCG--------------UCGa--GCCGCcUGUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 51580 | 0.67 | 0.29543 |
Target: 5'- uGCGCGGCGGCgaccgGGUGGucCAaGGUCu -3' miRNA: 3'- uCGCGCCGUCGag---CCGCCu-GUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 29348 | 0.67 | 0.275328 |
Target: 5'- -uCGgGGguGgUCGGCGcGuACAGGGCg -3' miRNA: 3'- ucGCgCCguCgAGCCGC-C-UGUCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 19059 | 0.67 | 0.302379 |
Target: 5'- aAGUGCGGCAGgcuggcgucCUCGGaGGugAGGcaGUCg -3' miRNA: 3'- -UCGCGCCGUC---------GAGCCgCCugUCC--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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