miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 22093 0.67 0.300281
Target:  5'- cAGCGaCGGCuGGCUgguguuccuguggcCGGaaacCGGACgcaAGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-UCGA--------------GCC----GCCUG---UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 2458 0.67 0.272732
Target:  5'- uGgGCGGcCAGCUCGGCGugccguaccaccuGACcuggagcugcuaugAGGGCg -3'
miRNA:   3'- uCgCGCC-GUCGAGCCGC-------------CUG--------------UCCCGg -5'
19102 5' -64.2 NC_004684.1 + 17261 0.67 0.269515
Target:  5'- cGGCGCuGGUccugcaacuGCUCGGCGGcgcugguuuucuggcCGGGGUCg -3'
miRNA:   3'- -UCGCG-CCGu--------CGAGCCGCCu--------------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 58603 0.67 0.288605
Target:  5'- uGCGCGGUgcuuugaucgacGGCccgUGGCGGcuggugccgcGCuGGGCCu -3'
miRNA:   3'- uCGCGCCG------------UCGa--GCCGCC----------UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 41428 0.67 0.294742
Target:  5'- -cCGUGGCGGUggugCGGCGGuGCcgccggugucaguGGGGCUg -3'
miRNA:   3'- ucGCGCCGUCGa---GCCGCC-UG-------------UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 51580 0.67 0.29543
Target:  5'- uGCGCGGCGGCgaccgGGUGGucCAaGGUCu -3'
miRNA:   3'- uCGCGCCGUCGag---CCGCCu-GUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 39457 0.67 0.302379
Target:  5'- cGUGCGGCuacCUCGGCucguGACAGGuaCa -3'
miRNA:   3'- uCGCGCCGuc-GAGCCGc---CUGUCCcgG- -5'
19102 5' -64.2 NC_004684.1 + 19059 0.67 0.302379
Target:  5'- aAGUGCGGCAGgcuggcgucCUCGGaGGugAGGcaGUCg -3'
miRNA:   3'- -UCGCGCCGUC---------GAGCCgCCugUCC--CGG- -5'
19102 5' -64.2 NC_004684.1 + 16789 0.67 0.268875
Target:  5'- aGGUGCGGC-GCgUCGuGUGGugGGcGcGCCa -3'
miRNA:   3'- -UCGCGCCGuCG-AGC-CGCCugUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 39015 0.67 0.268875
Target:  5'- cGGCGuCGGUaucgaccucuacGGCUCGGCGGuguccauugugcGCcgGGuGGCCa -3'
miRNA:   3'- -UCGC-GCCG------------UCGAGCCGCC------------UG--UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 63925 0.67 0.288605
Target:  5'- cGGCGUGGCugAGCUUgGGCGaGACGgcgaacaccguGGuGCCg -3'
miRNA:   3'- -UCGCGCCG--UCGAG-CCGC-CUGU-----------CC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 58756 0.67 0.287929
Target:  5'- cGGCGgGGguGCcgaggaUCGGCGGugccgguGCAccGGGCUu -3'
miRNA:   3'- -UCGCgCCguCG------AGCCGCC-------UGU--CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57384 0.67 0.281905
Target:  5'- cGCGCGGCAGgUcCGGCaguuccGGcaACGGGauGCCg -3'
miRNA:   3'- uCGCGCCGUCgA-GCCG------CC--UGUCC--CGG- -5'
19102 5' -64.2 NC_004684.1 + 55593 0.67 0.275328
Target:  5'- cGCGCccuucuccacGGUGGCcuggUCGGCccACGGGGCCa -3'
miRNA:   3'- uCGCG----------CCGUCG----AGCCGccUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 29348 0.67 0.275328
Target:  5'- -uCGgGGguGgUCGGCGcGuACAGGGCg -3'
miRNA:   3'- ucGCgCCguCgAGCCGC-C-UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 5329 0.67 0.275328
Target:  5'- cGUGCaGCAGUgggUGGCGGu--GGGCUg -3'
miRNA:   3'- uCGCGcCGUCGa--GCCGCCuguCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33390 0.68 0.247846
Target:  5'- uAGCGCGugaucgaGCAGCUUguucaccaaguaGGCGGuagguccgacggccAUGGGGCCg -3'
miRNA:   3'- -UCGCGC-------CGUCGAG------------CCGCC--------------UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33515 0.68 0.256336
Target:  5'- cGCG-GGCGGU--GGCGGcuauGCGGGGUCg -3'
miRNA:   3'- uCGCgCCGUCGagCCGCC----UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 52147 0.68 0.258805
Target:  5'- uGCGUGGCAGC--GGCGGGCcguagcuguccggguAggcgaaccGGGCCa -3'
miRNA:   3'- uCGCGCCGUCGagCCGCCUG---------------U--------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43741 0.68 0.260669
Target:  5'- uAGCGCaGCGcCUCGGCuGACGGuaccggcguggucaGGCCg -3'
miRNA:   3'- -UCGCGcCGUcGAGCCGcCUGUC--------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.