miRNA display CGI


Results 61 - 80 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 29769 0.68 0.250248
Target:  5'- cAGCGCaccgacGGC-GUUCGGCauGGGCGgccGGGCCc -3'
miRNA:   3'- -UCGCG------CCGuCGAGCCG--CCUGU---CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 14104 0.68 0.250248
Target:  5'- uGGUGUGGCucAGCccCGGUGGGUGGGaGCCg -3'
miRNA:   3'- -UCGCGCCG--UCGa-GCCGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 10069 0.68 0.262545
Target:  5'- uGUGUGGCcuacGGCcagUCGacCGGGCAGGGCUg -3'
miRNA:   3'- uCGCGCCG----UCG---AGCc-GCCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 63693 0.68 0.258805
Target:  5'- cAGCGCGGCGGCgcuGGCGaucuccugccagcguGccaACAGGGUg -3'
miRNA:   3'- -UCGCGCCGUCGag-CCGC---------------C---UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 18393 0.68 0.250248
Target:  5'- cAGCGgGGUcgGGCcCGGCcaGCAGGGCa -3'
miRNA:   3'- -UCGCgCCG--UCGaGCCGccUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 8481 0.68 0.256336
Target:  5'- aGGCGgGGUggGGCggggaCGGCGaGACGGuGCCg -3'
miRNA:   3'- -UCGCgCCG--UCGa----GCCGC-CUGUCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 26997 0.68 0.23843
Target:  5'- gAGCGCGGCgGGCgCGGCGaucaacagccaGGCAccgGGuGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGaGCCGC-----------CUGU---CC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 66776 0.68 0.242512
Target:  5'- cGGCGCGGUA-CUCGccgcccuuguggcuGCGGAacuuCGGGGUCu -3'
miRNA:   3'- -UCGCGCCGUcGAGC--------------CGCCU----GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 36246 0.68 0.24428
Target:  5'- uGGCGUGGCcaagAGCUaugaggugucCGGCGG-CcuGGCCa -3'
miRNA:   3'- -UCGCGCCG----UCGA----------GCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 25835 0.68 0.24428
Target:  5'- cGGCaucgGCGGCcagauGCUCGGCGGccuguucaACGGccucGGCCa -3'
miRNA:   3'- -UCG----CGCCGu----CGAGCCGCC--------UGUC----CCGG- -5'
19102 5' -64.2 NC_004684.1 + 27318 0.68 0.249646
Target:  5'- cGGUGCGGcCAGCUuugacgaCGGCGGuaucGCcguGGGCa -3'
miRNA:   3'- -UCGCGCC-GUCGA-------GCCGCC----UGu--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 39794 0.68 0.249646
Target:  5'- uGCGCuGGUAGCUgcgcCGGUccaugucGGACAGGuGCUu -3'
miRNA:   3'- uCGCG-CCGUCGA----GCCG-------CCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 19684 0.68 0.250248
Target:  5'- cGGCGCGGCGGCaaGGCcuGGCcGaGCCa -3'
miRNA:   3'- -UCGCGCCGUCGagCCGc-CUGuCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 22448 0.68 0.253886
Target:  5'- cGGCGCGGCGgcgaucccgcccgcGCUCcaGGcCGGuucccugGCAGcGGCCa -3'
miRNA:   3'- -UCGCGCCGU--------------CGAG--CC-GCC-------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 52903 0.68 0.256336
Target:  5'- gAGCGUccGGcCAGCaCGGCGG-CGuGGCCg -3'
miRNA:   3'- -UCGCG--CC-GUCGaGCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33515 0.68 0.256336
Target:  5'- cGCG-GGCGGU--GGCGGcuauGCGGGGUCg -3'
miRNA:   3'- uCGCgCCGUCGagCCGCC----UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 52147 0.68 0.258805
Target:  5'- uGCGUGGCAGC--GGCGGGCcguagcuguccggguAggcgaaccGGGCCa -3'
miRNA:   3'- uCGCGCCGUCGagCCGCCUG---------------U--------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43741 0.68 0.260669
Target:  5'- uAGCGCaGCGcCUCGGCuGACGGuaccggcguggucaGGCCg -3'
miRNA:   3'- -UCGCGcCGUcGAGCCGcCUGUC--------------CCGG- -5'
19102 5' -64.2 NC_004684.1 + 25304 0.68 0.232698
Target:  5'- aGGCgGCGGCGGUUCgucggcccuGGCGGcguAUGGcGGCCu -3'
miRNA:   3'- -UCG-CGCCGUCGAG---------CCGCC---UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 18414 0.68 0.232698
Target:  5'- ---uCGGCGGCcCGGCGGGCgcaccGGcGGCCg -3'
miRNA:   3'- ucgcGCCGUCGaGCCGCCUG-----UC-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.