miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 18393 0.68 0.250248
Target:  5'- cAGCGgGGUcgGGCcCGGCcaGCAGGGCa -3'
miRNA:   3'- -UCGCgCCG--UCGaGCCGccUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 24990 0.68 0.23843
Target:  5'- cGCGuCGGC-GCgUUGGgGucGGCGGGGCCg -3'
miRNA:   3'- uCGC-GCCGuCG-AGCCgC--CUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27318 0.68 0.249646
Target:  5'- cGGUGCGGcCAGCUuugacgaCGGCGGuaucGCcguGGGCa -3'
miRNA:   3'- -UCGCGCC-GUCGA-------GCCGCC----UGu--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 39794 0.68 0.249646
Target:  5'- uGCGCuGGUAGCUgcgcCGGUccaugucGGACAGGuGCUu -3'
miRNA:   3'- uCGCG-CCGUCGA----GCCG-------CCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 19684 0.68 0.250248
Target:  5'- cGGCGCGGCGGCaaGGCcuGGCcGaGCCa -3'
miRNA:   3'- -UCGCGCCGUCGagCCGc-CUGuCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 22448 0.68 0.253886
Target:  5'- cGGCGCGGCGgcgaucccgcccgcGCUCcaGGcCGGuucccugGCAGcGGCCa -3'
miRNA:   3'- -UCGCGCCGU--------------CGAG--CC-GCC-------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 33515 0.68 0.256336
Target:  5'- cGCG-GGCGGU--GGCGGcuauGCGGGGUCg -3'
miRNA:   3'- uCGCgCCGUCGagCCGCC----UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 52147 0.68 0.258805
Target:  5'- uGCGUGGCAGC--GGCGGGCcguagcuguccggguAggcgaaccGGGCCa -3'
miRNA:   3'- uCGCGCCGUCGagCCGCCUG---------------U--------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43741 0.68 0.260669
Target:  5'- uAGCGCaGCGcCUCGGCuGACGGuaccggcguggucaGGCCg -3'
miRNA:   3'- -UCGCGcCGUcGAGCCGcCUGUC--------------CCGG- -5'
19102 5' -64.2 NC_004684.1 + 52903 0.68 0.256336
Target:  5'- gAGCGUccGGcCAGCaCGGCGG-CGuGGCCg -3'
miRNA:   3'- -UCGCG--CC-GUCGaGCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 28519 0.69 0.229315
Target:  5'- cAGCGUGGCGGCguugaacCGcGCGuaaucgguguugagcGcCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUCGa------GC-CGC---------------CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33707 0.69 0.213018
Target:  5'- cGCcaGCGGCAGCggCGGUGGcccgaacuacucgacGCAGcgcGGCCa -3'
miRNA:   3'- uCG--CGCCGUCGa-GCCGCC---------------UGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 7708 0.69 0.195762
Target:  5'- -cCGC-GCAGCUCGGCgcaGGAaAGGGUCa -3'
miRNA:   3'- ucGCGcCGUCGAGCCG---CCUgUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 1394 0.69 0.216196
Target:  5'- uGGgGCGGCGGCUacCGGUacGGGCGGcugaGCCu -3'
miRNA:   3'- -UCgCGCCGUCGA--GCCG--CCUGUCc---CGG- -5'
19102 5' -64.2 NC_004684.1 + 62951 0.69 0.219955
Target:  5'- cGGCGCgcgccgacgaugguGGCGuGCUCGGUGGugcGCAcGuGGCCg -3'
miRNA:   3'- -UCGCG--------------CCGU-CGAGCCGCC---UGU-C-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 66487 0.69 0.221582
Target:  5'- --gGUGGCGGCUaggccuuggCGGCGGccuCGcGGGCCg -3'
miRNA:   3'- ucgCGCCGUCGA---------GCCGCCu--GU-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 1006 0.69 0.225421
Target:  5'- aGGUGCGgagauuuccaccgcGCAGCUC-GCGGcguGGGGCCa -3'
miRNA:   3'- -UCGCGC--------------CGUCGAGcCGCCug-UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 40692 0.69 0.227083
Target:  5'- uGGCGaCGaacuuCAGCUgGGCGG-CGGuGGCCg -3'
miRNA:   3'- -UCGC-GCc----GUCGAgCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 24517 0.69 0.227083
Target:  5'- cGCGCguucGGCGGUgccaucuaCGGCGGuguGCcGGGCCg -3'
miRNA:   3'- uCGCG----CCGUCGa-------GCCGCC---UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22348 0.69 0.205759
Target:  5'- cAG-GCGGUGGCggCGGCGG-CGGcGGUCg -3'
miRNA:   3'- -UCgCGCCGUCGa-GCCGCCuGUC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.