Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19102 | 5' | -64.2 | NC_004684.1 | + | 8426 | 1.09 | 0.000172 |
Target: 5'- cAGCGCGGCAGCUCGGCGGACAGGGCCc -3' miRNA: 3'- -UCGCGCCGUCGAGCCGCCUGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 43459 | 0.82 | 0.02308 |
Target: 5'- gGGCGCGGCAGCaggugCGGCGGcaGCAGGuGCg -3' miRNA: 3'- -UCGCGCCGUCGa----GCCGCC--UGUCC-CGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 353 | 0.79 | 0.035841 |
Target: 5'- uGCGCaGCAGCUCGGUGGcCA-GGCCa -3' miRNA: 3'- uCGCGcCGUCGAGCCGCCuGUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 54525 | 0.78 | 0.048407 |
Target: 5'- --gGCGGCGGcCUCGGCGGugGcGGCCu -3' miRNA: 3'- ucgCGCCGUC-GAGCCGCCugUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 39317 | 0.78 | 0.048407 |
Target: 5'- cGCGCGGCGGCcCGGCcacaccGcCGGGGCCg -3' miRNA: 3'- uCGCGCCGUCGaGCCGc-----CuGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 54345 | 0.77 | 0.053822 |
Target: 5'- cAGCGCGGCGGUggagaugUUGGCaagugccggGGGCGGGGUCg -3' miRNA: 3'- -UCGCGCCGUCG-------AGCCG---------CCUGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 60288 | 0.77 | 0.053968 |
Target: 5'- uGCGUGGCccGGUccUCGGCGGccucCAGGGCCu -3' miRNA: 3'- uCGCGCCG--UCG--AGCCGCCu---GUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 33817 | 0.77 | 0.058383 |
Target: 5'- cGGCGuCGGCgggcggugugcccGGCggCGGCGGcaACGGGGCCa -3' miRNA: 3'- -UCGC-GCCG-------------UCGa-GCCGCC--UGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 8920 | 0.76 | 0.067737 |
Target: 5'- gGGCGCGGCaAGUUCGcgcuggccucaGCGGGCagucggguccggcacGGGGCCg -3' miRNA: 3'- -UCGCGCCG-UCGAGC-----------CGCCUG---------------UCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 49171 | 0.76 | 0.06701 |
Target: 5'- cGGCGCagucucGGCGGCggCGGCGG-CGGcGGCCu -3' miRNA: 3'- -UCGCG------CCGUCGa-GCCGCCuGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 42012 | 0.75 | 0.080872 |
Target: 5'- uGCGCGGCGGCguaGGCGcuGACcGGGUCc -3' miRNA: 3'- uCGCGCCGUCGag-CCGC--CUGuCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 22389 | 0.75 | 0.07748 |
Target: 5'- cGUGCaGGCGGCgUCGGCGGauuccuaaccagcccGCuGGGCCu -3' miRNA: 3'- uCGCG-CCGUCG-AGCCGCC---------------UGuCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 9028 | 0.75 | 0.080872 |
Target: 5'- uGCGgGGCGGCaacCGGCGcGgcaacgccaGCAGGGCCa -3' miRNA: 3'- uCGCgCCGUCGa--GCCGC-C---------UGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 64934 | 0.75 | 0.080872 |
Target: 5'- uGGCgGCGGUgAGCgccUGGCGGGCGGuGGCCc -3' miRNA: 3'- -UCG-CGCCG-UCGa--GCCGCCUGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 57137 | 0.74 | 0.092409 |
Target: 5'- uGGCGCGGCuGGUUCgccuccauGGCGG-CGGuGGCCg -3' miRNA: 3'- -UCGCGCCG-UCGAG--------CCGCCuGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 33477 | 0.74 | 0.087617 |
Target: 5'- --gGCGGCGGCUgCGGUGGACGcGGCg -3' miRNA: 3'- ucgCGCCGUCGA-GCCGCCUGUcCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 65888 | 0.73 | 0.105495 |
Target: 5'- gAGCGCGGCGcGCaggUUGGCcacCAGGGCCg -3' miRNA: 3'- -UCGCGCCGU-CG---AGCCGccuGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 60071 | 0.73 | 0.117198 |
Target: 5'- cGGCcCGGCGGCcCGuGCGGGCcuucaccGGGCCa -3' miRNA: 3'- -UCGcGCCGUCGaGC-CGCCUGu------CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 46434 | 0.73 | 0.108313 |
Target: 5'- cGGCGCaucuggaacaGCAGUUCGGCgcgguGGGcCAGGGCCa -3' miRNA: 3'- -UCGCGc---------CGUCGAGCCG-----CCU-GUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 11519 | 0.73 | 0.108313 |
Target: 5'- ---cCGGCAccGCUCGGUGGGCcuGGGCCa -3' miRNA: 3'- ucgcGCCGU--CGAGCCGCCUGu-CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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