miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 46434 0.73 0.108313
Target:  5'- cGGCGCaucuggaacaGCAGUUCGGCgcgguGGGcCAGGGCCa -3'
miRNA:   3'- -UCGCGc---------CGUCGAGCCG-----CCU-GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65888 0.73 0.105495
Target:  5'- gAGCGCGGCGcGCaggUUGGCcacCAGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CG---AGCCGccuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 41254 0.73 0.099535
Target:  5'- uGCGCGGcCAGCgaggugcuggugCGGuCGGACAGcGCCg -3'
miRNA:   3'- uCGCGCC-GUCGa-----------GCC-GCCUGUCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 9908 0.72 0.123494
Target:  5'- cGUGCGGC-GCUugucgaCGGUGGGCAGGaCCg -3'
miRNA:   3'- uCGCGCCGuCGA------GCCGCCUGUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 56809 0.72 0.133528
Target:  5'- cGCGCGccgaacCAGCcggaUCGGCGGGgaacgcCAGGGCCu -3'
miRNA:   3'- uCGCGCc-----GUCG----AGCCGCCU------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57589 0.72 0.137037
Target:  5'- gAGCGuCGGguGCcacCGGC--GCAGGGCCu -3'
miRNA:   3'- -UCGC-GCCguCGa--GCCGccUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 55311 0.72 0.136682
Target:  5'- cGCGCGGgccagcaccucguCGcGCUCGGCGGcCAGGcgaGCCg -3'
miRNA:   3'- uCGCGCC-------------GU-CGAGCCGCCuGUCC---CGG- -5'
19102 5' -64.2 NC_004684.1 + 10700 0.72 0.123494
Target:  5'- gGGaCGCGGUGGCUcgcaacCGGCaGGGCAGccaGGCCg -3'
miRNA:   3'- -UC-GCGCCGUCGA------GCCG-CCUGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 48931 0.72 0.129765
Target:  5'- aGGCcCGGCcucgucgccgaacGGCacgUCGGCGGGCGGGGUg -3'
miRNA:   3'- -UCGcGCCG-------------UCG---AGCCGCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 4029 0.72 0.133528
Target:  5'- cGCGuCGGCcGCUCGGUGcGCuGGGCg -3'
miRNA:   3'- uCGC-GCCGuCGAGCCGCcUGuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 40356 0.72 0.137037
Target:  5'- uGGCgGCGGCcuuggccuugggGGcCUCGGCGGugGcGGCCu -3'
miRNA:   3'- -UCG-CGCCG------------UC-GAGCCGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65331 0.71 0.159919
Target:  5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3'
miRNA:   3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66528 0.71 0.14063
Target:  5'- cAGCGCGGCc---CGGCGGGCAcGGCg -3'
miRNA:   3'- -UCGCGCCGucgaGCCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 66899 0.71 0.144309
Target:  5'- cGGCGCGGCc-UUCGGCGcGGCcuuGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGucGAGCCGC-CUG---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 47141 0.71 0.151542
Target:  5'- uGGCguagGCGGCcccggugcccaggAGCaccguagCGGCGGcCAGGGCCg -3'
miRNA:   3'- -UCG----CGCCG-------------UCGa------GCCGCCuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27797 0.71 0.155879
Target:  5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3'
miRNA:   3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 6160 0.71 0.159919
Target:  5'- cGGCgGCGGcCAGCgugCGGCGGuagGCAccGGGCa -3'
miRNA:   3'- -UCG-CGCC-GUCGa--GCCGCC---UGU--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 40732 0.71 0.164053
Target:  5'- cAGCGCGGCGGgggCGGUGG-CGGuGGUg -3'
miRNA:   3'- -UCGCGCCGUCga-GCCGCCuGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 57232 0.71 0.144309
Target:  5'- gAGCGCGGUGGCcagCGGCGG-Cu-GGCUg -3'
miRNA:   3'- -UCGCGCCGUCGa--GCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 19370 0.71 0.14063
Target:  5'- cGCGCaGCGGUUCc-CGGAgCAGGGCCu -3'
miRNA:   3'- uCGCGcCGUCGAGccGCCU-GUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.