miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 9826 0.71 0.151932
Target:  5'- gGGCGaugucggccaacCGGCgcAGCUCGGCGGuCGcgcucuggaggcGGGCCa -3'
miRNA:   3'- -UCGC------------GCCG--UCGAGCCGCCuGU------------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27797 0.71 0.155879
Target:  5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3'
miRNA:   3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 47141 0.71 0.151542
Target:  5'- uGGCguagGCGGCcccggugcccaggAGCaccguagCGGCGGcCAGGGCCg -3'
miRNA:   3'- -UCG----CGCCG-------------UCGa------GCCGCCuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 38129 0.71 0.155879
Target:  5'- gAGCuGuCGGCGG-UCGGCGGugAugccuugaaugGGGCCg -3'
miRNA:   3'- -UCG-C-GCCGUCgAGCCGCCugU-----------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66899 0.71 0.144309
Target:  5'- cGGCGCGGCc-UUCGGCGcGGCcuuGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGucGAGCCGC-CUG---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 2264 0.7 0.190446
Target:  5'- cAGCGCGGC-----GGCGGGCAuugccgccagccuGGGCCa -3'
miRNA:   3'- -UCGCGCCGucgagCCGCCUGU-------------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 56089 0.7 0.177036
Target:  5'- uGUGCGGCAuGCU-GGCGGugGCGGuGGCa -3'
miRNA:   3'- uCGCGCCGU-CGAgCCGCC--UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 10794 0.7 0.168282
Target:  5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27982 0.7 0.172609
Target:  5'- gAGUGCGG-AGUUCGGCGGcguCuGGGUg -3'
miRNA:   3'- -UCGCGCCgUCGAGCCGCCu--GuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 63525 0.7 0.172609
Target:  5'- uGGCGUcGCAGCUC-GCGGGCGuGGCg -3'
miRNA:   3'- -UCGCGcCGUCGAGcCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 65709 0.7 0.172609
Target:  5'- uGCGCGcCAGCUCGGCcuGguGGGCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGccUguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 25653 0.7 0.168282
Target:  5'- gAGaGCGGCGGCgguacCGGGCAGGGCg -3'
miRNA:   3'- -UCgCGCCGUCGagcc-GCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 46600 0.7 0.172609
Target:  5'- uGGCGuuGCGuGC-CGGUGGcuuCGGGGCCa -3'
miRNA:   3'- -UCGCgcCGU-CGaGCCGCCu--GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 61792 0.7 0.190924
Target:  5'- uGCGCGcCAGCUCGGCcccgucGGCAggcGGGUCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGc-----CUGU---CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 53097 0.7 0.189493
Target:  5'- uGCGCGGCGGCcUGcaaggccacaucacGCGGGUAGGuGCCg -3'
miRNA:   3'- uCGCGCCGUCGaGC--------------CGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 52577 0.7 0.168282
Target:  5'- cGGCGCGccccaCAGUcCGGUGGACAGcGcGCCg -3'
miRNA:   3'- -UCGCGCc----GUCGaGCCGCCUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 57542 0.7 0.171301
Target:  5'- --gGCGGCAGCUcaccggCGGCGGugaucgacggcaagACGGuGGCCu -3'
miRNA:   3'- ucgCGCCGUCGA------GCCGCC--------------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 43498 0.7 0.181562
Target:  5'- cGCaGCGGCAGCaggugcagCGGCagGGGCGGGaGCg -3'
miRNA:   3'- uCG-CGCCGUCGa-------GCCG--CCUGUCC-CGg -5'
19102 5' -64.2 NC_004684.1 + 1208 0.7 0.177036
Target:  5'- aAGCGCGGCgucgacuucgucGGcCUCGGCGG-CcuGGUCg -3'
miRNA:   3'- -UCGCGCCG------------UC-GAGCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10235 0.7 0.176588
Target:  5'- uGCGCGaGCAGCUggccgugCGcGUGGAgcGGGCCa -3'
miRNA:   3'- uCGCGC-CGUCGA-------GC-CGCCUguCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.