miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 10794 0.7 0.168282
Target:  5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 62894 0.7 0.181105
Target:  5'- uGGC-CGcCAGCUCGGCGGGguuacggUAGcGGCCa -3'
miRNA:   3'- -UCGcGCcGUCGAGCCGCCU-------GUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 61335 0.7 0.181562
Target:  5'- cAGCGCGGCGuGgUUGGUcaGCuGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CgAGCCGccUGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 56089 0.7 0.177036
Target:  5'- uGUGCGGCAuGCU-GGCGGugGCGGuGGCa -3'
miRNA:   3'- uCGCGCCGU-CGAgCCGCC--UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 40692 0.69 0.227083
Target:  5'- uGGCGaCGaacuuCAGCUgGGCGG-CGGuGGCCg -3'
miRNA:   3'- -UCGC-GCc----GUCGAgCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 7708 0.69 0.195762
Target:  5'- -cCGC-GCAGCUCGGCgcaGGAaAGGGUCa -3'
miRNA:   3'- ucGCGcCGUCGAGCCG---CCUgUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22348 0.69 0.205759
Target:  5'- cAG-GCGGUGGCggCGGCGG-CGGcGGUCg -3'
miRNA:   3'- -UCgCGCCGUCGa-GCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 66487 0.69 0.221582
Target:  5'- --gGUGGCGGCUaggccuuggCGGCGGccuCGcGGGCCg -3'
miRNA:   3'- ucgCGCCGUCGA---------GCCGCCu--GU-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 1006 0.69 0.225421
Target:  5'- aGGUGCGgagauuuccaccgcGCAGCUC-GCGGcguGGGGCCa -3'
miRNA:   3'- -UCGCGC--------------CGUCGAGcCGCCug-UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 24517 0.69 0.227083
Target:  5'- cGCGCguucGGCGGUgccaucuaCGGCGGuguGCcGGGCCg -3'
miRNA:   3'- uCGCG----CCGUCGa-------GCCGCC---UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33707 0.69 0.213018
Target:  5'- cGCcaGCGGCAGCggCGGUGGcccgaacuacucgacGCAGcgcGGCCa -3'
miRNA:   3'- uCG--CGCCGUCGa-GCCGCC---------------UGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 62951 0.69 0.219955
Target:  5'- cGGCGCgcgccgacgaugguGGCGuGCUCGGUGGugcGCAcGuGGCCg -3'
miRNA:   3'- -UCGCG--------------CCGU-CGAGCCGCC---UGU-C-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 44365 0.69 0.195762
Target:  5'- aGGCGUGGCAGgaaaUCGcuGCcGACGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGUCg---AGC--CGcCUGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 60234 0.69 0.216196
Target:  5'- uGCGCGGCuGUUCGGUGG-CGGucacugcuGGaCCa -3'
miRNA:   3'- uCGCGCCGuCGAGCCGCCuGUC--------CC-GG- -5'
19102 5' -64.2 NC_004684.1 + 28519 0.69 0.229315
Target:  5'- cAGCGUGGCGGCguugaacCGcGCGuaaucgguguugagcGcCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUCGa------GC-CGC---------------CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 23737 0.69 0.200707
Target:  5'- cGCugGCGGCGcacuGCUCGGUGcGCAguucGGGCCg -3'
miRNA:   3'- uCG--CGCCGU----CGAGCCGCcUGU----CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 6215 0.69 0.200707
Target:  5'- cGGCGCgaucucGGcCAGCUgGGCGGcCA-GGCCu -3'
miRNA:   3'- -UCGCG------CC-GUCGAgCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 1394 0.69 0.216196
Target:  5'- uGGgGCGGCGGCUacCGGUacGGGCGGcugaGCCu -3'
miRNA:   3'- -UCgCGCCGUCGA--GCCG--CCUGUCc---CGG- -5'
19102 5' -64.2 NC_004684.1 + 26997 0.68 0.23843
Target:  5'- gAGCGCGGCgGGCgCGGCGaucaacagccaGGCAccgGGuGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGaGCCGC-----------CUGU---CC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 18414 0.68 0.232698
Target:  5'- ---uCGGCGGCcCGGCGGGCgcaccGGcGGCCg -3'
miRNA:   3'- ucgcGCCGUCGaGCCGCCUG-----UC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.