miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 41059 0.71 0.157484
Target:  5'- gAGCGCaccgcgucggcaaucGGCGGCcCGGCGG-CcuGGCCg -3'
miRNA:   3'- -UCGCG---------------CCGUCGaGCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 6160 0.71 0.159919
Target:  5'- cGGCgGCGGcCAGCgugCGGCGGuagGCAccGGGCa -3'
miRNA:   3'- -UCG-CGCC-GUCGa--GCCGCC---UGU--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 65331 0.71 0.159919
Target:  5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3'
miRNA:   3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 40732 0.71 0.164053
Target:  5'- cAGCGCGGCGGgggCGGUGG-CGGuGGUg -3'
miRNA:   3'- -UCGCGCCGUCga-GCCGCCuGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 11079 0.71 0.164053
Target:  5'- cAGCGCGGUcuccacGUccCGGCGcGcCAGGGCCg -3'
miRNA:   3'- -UCGCGCCGu-----CGa-GCCGC-CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 25653 0.7 0.168282
Target:  5'- gAGaGCGGCGGCgguacCGGGCAGGGCg -3'
miRNA:   3'- -UCgCGCCGUCGagcc-GCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 10794 0.7 0.168282
Target:  5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 52577 0.7 0.168282
Target:  5'- cGGCGCGccccaCAGUcCGGUGGACAGcGcGCCg -3'
miRNA:   3'- -UCGCGCc----GUCGaGCCGCCUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 57542 0.7 0.171301
Target:  5'- --gGCGGCAGCUcaccggCGGCGGugaucgacggcaagACGGuGGCCu -3'
miRNA:   3'- ucgCGCCGUCGA------GCCGCC--------------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 65709 0.7 0.172609
Target:  5'- uGCGCGcCAGCUCGGCcuGguGGGCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGccUguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 63525 0.7 0.172609
Target:  5'- uGGCGUcGCAGCUC-GCGGGCGuGGCg -3'
miRNA:   3'- -UCGCGcCGUCGAGcCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 27982 0.7 0.172609
Target:  5'- gAGUGCGG-AGUUCGGCGGcguCuGGGUg -3'
miRNA:   3'- -UCGCGCCgUCGAGCCGCCu--GuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 46600 0.7 0.172609
Target:  5'- uGGCGuuGCGuGC-CGGUGGcuuCGGGGCCa -3'
miRNA:   3'- -UCGCgcCGU-CGaGCCGCCu--GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10235 0.7 0.176588
Target:  5'- uGCGCGaGCAGCUggccgugCGcGUGGAgcGGGCCa -3'
miRNA:   3'- uCGCGC-CGUCGA-------GC-CGCCUguCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 34349 0.7 0.177036
Target:  5'- gAGCGCGaGC-GCUUgGGCGGGCGGGaUCa -3'
miRNA:   3'- -UCGCGC-CGuCGAG-CCGCCUGUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 1208 0.7 0.177036
Target:  5'- aAGCGCGGCgucgacuucgucGGcCUCGGCGG-CcuGGUCg -3'
miRNA:   3'- -UCGCGCCG------------UC-GAGCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 56089 0.7 0.177036
Target:  5'- uGUGCGGCAuGCU-GGCGGugGCGGuGGCa -3'
miRNA:   3'- uCGCGCCGU-CGAgCCGCC--UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 62894 0.7 0.181105
Target:  5'- uGGC-CGcCAGCUCGGCGGGguuacggUAGcGGCCa -3'
miRNA:   3'- -UCGcGCcGUCGAGCCGCCU-------GUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 61335 0.7 0.181562
Target:  5'- cAGCGCGGCGuGgUUGGUcaGCuGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CgAGCCGccUGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 43498 0.7 0.181562
Target:  5'- cGCaGCGGCAGCaggugcagCGGCagGGGCGGGaGCg -3'
miRNA:   3'- uCG-CGCCGUCGa-------GCCG--CCUGUCC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.