Results 41 - 60 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19102 | 5' | -64.2 | NC_004684.1 | + | 51580 | 0.67 | 0.29543 |
Target: 5'- uGCGCGGCGGCgaccgGGUGGucCAaGGUCu -3' miRNA: 3'- uCGCGCCGUCGag---CCGCCu-GUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 41428 | 0.67 | 0.294742 |
Target: 5'- -cCGUGGCGGUggugCGGCGGuGCcgccggugucaguGGGGCUg -3' miRNA: 3'- ucGCGCCGUCGa---GCCGCC-UG-------------UCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 63925 | 0.67 | 0.288605 |
Target: 5'- cGGCGUGGCugAGCUUgGGCGaGACGgcgaacaccguGGuGCCg -3' miRNA: 3'- -UCGCGCCG--UCGAG-CCGC-CUGU-----------CC-CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 58603 | 0.67 | 0.288605 |
Target: 5'- uGCGCGGUgcuuugaucgacGGCccgUGGCGGcuggugccgcGCuGGGCCu -3' miRNA: 3'- uCGCGCCG------------UCGa--GCCGCC----------UGuCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 58756 | 0.67 | 0.287929 |
Target: 5'- cGGCGgGGguGCcgaggaUCGGCGGugccgguGCAccGGGCUu -3' miRNA: 3'- -UCGCgCCguCG------AGCCGCC-------UGU--CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 24107 | 0.67 | 0.286582 |
Target: 5'- cGCGCGGCaucgccaaggacguGGUgcgCGGCG-ACAuGGCCg -3' miRNA: 3'- uCGCGCCG--------------UCGa--GCCGCcUGUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 57384 | 0.67 | 0.281905 |
Target: 5'- cGCGCGGCAGgUcCGGCaguuccGGcaACGGGauGCCg -3' miRNA: 3'- uCGCGCCGUCgA-GCCG------CC--UGUCC--CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 55593 | 0.67 | 0.275328 |
Target: 5'- cGCGCccuucuccacGGUGGCcuggUCGGCccACGGGGCCa -3' miRNA: 3'- uCGCG----------CCGUCG----AGCCGccUGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 5329 | 0.67 | 0.275328 |
Target: 5'- cGUGCaGCAGUgggUGGCGGu--GGGCUg -3' miRNA: 3'- uCGCGcCGUCGa--GCCGCCuguCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 29348 | 0.67 | 0.275328 |
Target: 5'- -uCGgGGguGgUCGGCGcGuACAGGGCg -3' miRNA: 3'- ucGCgCCguCgAGCCGC-C-UGUCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 2458 | 0.67 | 0.272732 |
Target: 5'- uGgGCGGcCAGCUCGGCGugccguaccaccuGACcuggagcugcuaugAGGGCg -3' miRNA: 3'- uCgCGCC-GUCGAGCCGC-------------CUG--------------UCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 17261 | 0.67 | 0.269515 |
Target: 5'- cGGCGCuGGUccugcaacuGCUCGGCGGcgcugguuuucuggcCGGGGUCg -3' miRNA: 3'- -UCGCG-CCGu--------CGAGCCGCCu--------------GUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 39015 | 0.67 | 0.268875 |
Target: 5'- cGGCGuCGGUaucgaccucuacGGCUCGGCGGuguccauugugcGCcgGGuGGCCa -3' miRNA: 3'- -UCGC-GCCG------------UCGAGCCGCC------------UG--UC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 16789 | 0.67 | 0.268875 |
Target: 5'- aGGUGCGGC-GCgUCGuGUGGugGGcGcGCCa -3' miRNA: 3'- -UCGCGCCGuCG-AGC-CGCCugUC-C-CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 33887 | 0.67 | 0.268875 |
Target: 5'- cGGUGCgGGCGGUgcCGGUGGGCGcggacagauauGGGCg -3' miRNA: 3'- -UCGCG-CCGUCGa-GCCGCCUGU-----------CCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 42662 | 0.67 | 0.268875 |
Target: 5'- gAGCGCGGUggagGGCaucaCGGCGGu---GGCCa -3' miRNA: 3'- -UCGCGCCG----UCGa---GCCGCCugucCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 9463 | 0.68 | 0.262545 |
Target: 5'- aGGCGguCGGCAauGUcaUCGGCGGuCAGcccGGCCa -3' miRNA: 3'- -UCGC--GCCGU--CG--AGCCGCCuGUC---CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 10069 | 0.68 | 0.262545 |
Target: 5'- uGUGUGGCcuacGGCcagUCGacCGGGCAGGGCUg -3' miRNA: 3'- uCGCGCCG----UCG---AGCc-GCCUGUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 43741 | 0.68 | 0.260669 |
Target: 5'- uAGCGCaGCGcCUCGGCuGACGGuaccggcguggucaGGCCg -3' miRNA: 3'- -UCGCGcCGUcGAGCCGcCUGUC--------------CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 63693 | 0.68 | 0.258805 |
Target: 5'- cAGCGCGGCGGCgcuGGCGaucuccugccagcguGccaACAGGGUg -3' miRNA: 3'- -UCGCGCCGUCGag-CCGC---------------C---UGUCCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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