miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 9028 0.75 0.080872
Target:  5'- uGCGgGGCGGCaacCGGCGcGgcaacgccaGCAGGGCCa -3'
miRNA:   3'- uCGCgCCGUCGa--GCCGC-C---------UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 9463 0.68 0.262545
Target:  5'- aGGCGguCGGCAauGUcaUCGGCGGuCAGcccGGCCa -3'
miRNA:   3'- -UCGC--GCCGU--CG--AGCCGCCuGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 9826 0.71 0.151932
Target:  5'- gGGCGaugucggccaacCGGCgcAGCUCGGCGGuCGcgcucuggaggcGGGCCa -3'
miRNA:   3'- -UCGC------------GCCG--UCGAGCCGCCuGU------------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 9908 0.72 0.123494
Target:  5'- cGUGCGGC-GCUugucgaCGGUGGGCAGGaCCg -3'
miRNA:   3'- uCGCGCCGuCGA------GCCGCCUGUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 10069 0.68 0.262545
Target:  5'- uGUGUGGCcuacGGCcagUCGacCGGGCAGGGCUg -3'
miRNA:   3'- uCGCGCCG----UCG---AGCc-GCCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10235 0.7 0.176588
Target:  5'- uGCGCGaGCAGCUggccgugCGcGUGGAgcGGGCCa -3'
miRNA:   3'- uCGCGC-CGUCGA-------GC-CGCCUguCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10539 0.66 0.308741
Target:  5'- cGC-CGGUAGCuucaucgUCGGCGGGgAGGcCCu -3'
miRNA:   3'- uCGcGCCGUCG-------AGCCGCCUgUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 10700 0.72 0.123494
Target:  5'- gGGaCGCGGUGGCUcgcaacCGGCaGGGCAGccaGGCCg -3'
miRNA:   3'- -UC-GCGCCGUCGA------GCCG-CCUGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 10794 0.7 0.168282
Target:  5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 11079 0.71 0.164053
Target:  5'- cAGCGCGGUcuccacGUccCGGCGcGcCAGGGCCg -3'
miRNA:   3'- -UCGCGCCGu-----CGa-GCCGC-CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 11519 0.73 0.108313
Target:  5'- ---cCGGCAccGCUCGGUGGGCcuGGGCCa -3'
miRNA:   3'- ucgcGCCGU--CGAGCCGCCUGu-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 12018 0.66 0.331432
Target:  5'- -uCGCGGCGGC--GGUGGcCAaGGCCa -3'
miRNA:   3'- ucGCGCCGUCGagCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 12768 0.66 0.339009
Target:  5'- cGCGCGGCuGCgccugCGGCcaacgaGGACAacGGCa -3'
miRNA:   3'- uCGCGCCGuCGa----GCCG------CCUGUc-CCGg -5'
19102 5' -64.2 NC_004684.1 + 13979 0.66 0.353749
Target:  5'- cGCGCGGCgcaggccAGCcCGGCcaccuggacacGGuGCAGuGGCCc -3'
miRNA:   3'- uCGCGCCG-------UCGaGCCG-----------CC-UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 14104 0.68 0.250248
Target:  5'- uGGUGUGGCucAGCccCGGUGGGUGGGaGCCg -3'
miRNA:   3'- -UCGCGCCG--UCGa-GCCGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 15581 0.68 0.24428
Target:  5'- cAGCGCGcGCGGCcUGGCcguGGACcGGGaCUa -3'
miRNA:   3'- -UCGCGC-CGUCGaGCCG---CCUGuCCC-GG- -5'
19102 5' -64.2 NC_004684.1 + 16014 0.66 0.323981
Target:  5'- uGGaCGaCGGCcaaGGCcucaccUCGGUGGACuGGGCg -3'
miRNA:   3'- -UC-GC-GCCG---UCG------AGCCGCCUGuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 16789 0.67 0.268875
Target:  5'- aGGUGCGGC-GCgUCGuGUGGugGGcGcGCCa -3'
miRNA:   3'- -UCGCGCCGuCG-AGC-CGCCugUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 17261 0.67 0.269515
Target:  5'- cGGCGCuGGUccugcaacuGCUCGGCGGcgcugguuuucuggcCGGGGUCg -3'
miRNA:   3'- -UCGCG-CCGu--------CGAGCCGCCu--------------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 17999 0.68 0.232698
Target:  5'- uGGCGCugaccgaguacGGCGGCaacaUCGGCaaggccauGGACAgccuGGGCCu -3'
miRNA:   3'- -UCGCG-----------CCGUCG----AGCCG--------CCUGU----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.