miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 18393 0.68 0.250248
Target:  5'- cAGCGgGGUcgGGCcCGGCcaGCAGGGCa -3'
miRNA:   3'- -UCGCgCCG--UCGaGCCGccUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 18414 0.68 0.232698
Target:  5'- ---uCGGCGGCcCGGCGGGCgcaccGGcGGCCg -3'
miRNA:   3'- ucgcGCCGUCGaGCCGCCUG-----UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 18890 0.66 0.331432
Target:  5'- cAGCGCGGCucCUCcacGUcGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGucGAGc--CGcCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 19059 0.67 0.302379
Target:  5'- aAGUGCGGCAGgcuggcgucCUCGGaGGugAGGcaGUCg -3'
miRNA:   3'- -UCGCGCCGUC---------GAGCCgCCugUCC--CGG- -5'
19102 5' -64.2 NC_004684.1 + 19370 0.71 0.14063
Target:  5'- cGCGCaGCGGUUCc-CGGAgCAGGGCCu -3'
miRNA:   3'- uCGCGcCGUCGAGccGCCU-GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 19684 0.68 0.250248
Target:  5'- cGGCGCGGCGGCaaGGCcuGGCcGaGCCa -3'
miRNA:   3'- -UCGCGCCGUCGagCCGc-CUGuCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 19763 0.66 0.354537
Target:  5'- uGCGCGGCcuGC-CGGUgcccgccggGGGCGacaagauggcGGGCCu -3'
miRNA:   3'- uCGCGCCGu-CGaGCCG---------CCUGU----------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 21860 0.67 0.302379
Target:  5'- cGGUGCGcCGGUcgaagaGGUGGaugaGCAGGGCCa -3'
miRNA:   3'- -UCGCGCcGUCGag----CCGCC----UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22093 0.67 0.300281
Target:  5'- cAGCGaCGGCuGGCUgguguuccuguggcCGGaaacCGGACgcaAGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-UCGA--------------GCC----GCCUG---UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22143 0.66 0.316655
Target:  5'- cAGCGCGGCAuccaUGGCaucaccgaGGagcaccGCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUcga-GCCG--------CC------UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22192 0.66 0.339009
Target:  5'- cGCGCuGCcGCUgGaGCGcGGCGGGGUg -3'
miRNA:   3'- uCGCGcCGuCGAgC-CGC-CUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 22279 0.66 0.316655
Target:  5'- uGGCgGCGGCcaaGGCccgcgCGGCGG-CGGuGCCg -3'
miRNA:   3'- -UCG-CGCCG---UCGa----GCCGCCuGUCcCGG- -5'
19102 5' -64.2 NC_004684.1 + 22348 0.69 0.205759
Target:  5'- cAG-GCGGUGGCggCGGCGG-CGGcGGUCg -3'
miRNA:   3'- -UCgCGCCGUCGa-GCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 22389 0.75 0.07748
Target:  5'- cGUGCaGGCGGCgUCGGCGGauuccuaaccagcccGCuGGGCCu -3'
miRNA:   3'- uCGCG-CCGUCG-AGCCGCC---------------UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 22448 0.68 0.253886
Target:  5'- cGGCGCGGCGgcgaucccgcccgcGCUCcaGGcCGGuucccugGCAGcGGCCa -3'
miRNA:   3'- -UCGCGCCGU--------------CGAG--CC-GCC-------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 23737 0.69 0.200707
Target:  5'- cGCugGCGGCGcacuGCUCGGUGcGCAguucGGGCCg -3'
miRNA:   3'- uCG--CGCCGU----CGAGCCGCcUGU----CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 24107 0.67 0.286582
Target:  5'- cGCGCGGCaucgccaaggacguGGUgcgCGGCG-ACAuGGCCg -3'
miRNA:   3'- uCGCGCCG--------------UCGa--GCCGCcUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 24499 0.66 0.316655
Target:  5'- cAG-GUGGCGGuCUCGGUGc-CAGaGGCCg -3'
miRNA:   3'- -UCgCGCCGUC-GAGCCGCcuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 24517 0.69 0.227083
Target:  5'- cGCGCguucGGCGGUgccaucuaCGGCGGuguGCcGGGCCg -3'
miRNA:   3'- uCGCG----CCGUCGa-------GCCGCC---UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 24838 0.66 0.354537
Target:  5'- cAGgGCGGCAGCgguaGCGccACcGGGCCg -3'
miRNA:   3'- -UCgCGCCGUCGagc-CGCc-UGuCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.