miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 24990 0.68 0.23843
Target:  5'- cGCGuCGGC-GCgUUGGgGucGGCGGGGCCg -3'
miRNA:   3'- uCGC-GCCGuCG-AGCCgC--CUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 25304 0.68 0.232698
Target:  5'- aGGCgGCGGCGGUUCgucggcccuGGCGGcguAUGGcGGCCu -3'
miRNA:   3'- -UCG-CGCCGUCGAG---------CCGCC---UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 25653 0.7 0.168282
Target:  5'- gAGaGCGGCGGCgguacCGGGCAGGGCg -3'
miRNA:   3'- -UCgCGCCGUCGagcc-GCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 25835 0.68 0.24428
Target:  5'- cGGCaucgGCGGCcagauGCUCGGCGGccuguucaACGGccucGGCCa -3'
miRNA:   3'- -UCG----CGCCGu----CGAGCCGCC--------UGUC----CCGG- -5'
19102 5' -64.2 NC_004684.1 + 26583 0.66 0.309455
Target:  5'- cGCGCGGCGGUgUGcGCGGguucgccaccgGCGGcGGCg -3'
miRNA:   3'- uCGCGCCGUCGaGC-CGCC-----------UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 26641 0.66 0.316655
Target:  5'- cGGCGCGG-AGUucuUCGGgguguCGGAggugccgauccuCGGGGCCa -3'
miRNA:   3'- -UCGCGCCgUCG---AGCC-----GCCU------------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 26997 0.68 0.23843
Target:  5'- gAGCGCGGCgGGCgCGGCGaucaacagccaGGCAccgGGuGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGaGCCGC-----------CUGU---CC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 27318 0.68 0.249646
Target:  5'- cGGUGCGGcCAGCUuugacgaCGGCGGuaucGCcguGGGCa -3'
miRNA:   3'- -UCGCGCC-GUCGA-------GCCGCC----UGu--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 27797 0.71 0.155879
Target:  5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3'
miRNA:   3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 27982 0.7 0.172609
Target:  5'- gAGUGCGG-AGUUCGGCGGcguCuGGGUg -3'
miRNA:   3'- -UCGCGCCgUCGAGCCGCCu--GuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 28043 0.66 0.329184
Target:  5'- gAGCGCgagaucaugccgguGGuCGGCccCGGCGGugugGCcGGGCCg -3'
miRNA:   3'- -UCGCG--------------CC-GUCGa-GCCGCC----UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 28519 0.69 0.229315
Target:  5'- cAGCGUGGCGGCguugaacCGcGCGuaaucgguguugagcGcCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUCGa------GC-CGC---------------CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 29348 0.67 0.275328
Target:  5'- -uCGgGGguGgUCGGCGcGuACAGGGCg -3'
miRNA:   3'- ucGCgCCguCgAGCCGC-C-UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 29769 0.68 0.250248
Target:  5'- cAGCGCaccgacGGC-GUUCGGCauGGGCGgccGGGCCc -3'
miRNA:   3'- -UCGCG------CCGuCGAGCCG--CCUGU---CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 30211 0.73 0.114163
Target:  5'- cGCGCGcGUcgauGCUCGGCGcGACGuGGCCc -3'
miRNA:   3'- uCGCGC-CGu---CGAGCCGC-CUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 30498 0.66 0.331432
Target:  5'- gAGCGUggGGCGGCU-GGCGcu-GGGGUCg -3'
miRNA:   3'- -UCGCG--CCGUCGAgCCGCcugUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33390 0.68 0.247846
Target:  5'- uAGCGCGugaucgaGCAGCUUguucaccaaguaGGCGGuagguccgacggccAUGGGGCCg -3'
miRNA:   3'- -UCGCGC-------CGUCGAG------------CCGCC--------------UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33477 0.74 0.087617
Target:  5'- --gGCGGCGGCUgCGGUGGACGcGGCg -3'
miRNA:   3'- ucgCGCCGUCGA-GCCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 33515 0.68 0.256336
Target:  5'- cGCG-GGCGGU--GGCGGcuauGCGGGGUCg -3'
miRNA:   3'- uCGCgCCGUCGagCCGCC----UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33707 0.69 0.213018
Target:  5'- cGCcaGCGGCAGCggCGGUGGcccgaacuacucgacGCAGcgcGGCCa -3'
miRNA:   3'- uCG--CGCCGUCGa-GCCGCC---------------UGUC---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.