miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 66899 0.71 0.144309
Target:  5'- cGGCGCGGCc-UUCGGCGcGGCcuuGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGucGAGCCGC-CUG---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 66776 0.68 0.242512
Target:  5'- cGGCGCGGUA-CUCGccgcccuuguggcuGCGGAacuuCGGGGUCu -3'
miRNA:   3'- -UCGCGCCGUcGAGC--------------CGCCU----GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66684 0.68 0.23843
Target:  5'- gAGCGCcaGGCcGUccacCGGCGGcugaccuCGGGGCCg -3'
miRNA:   3'- -UCGCG--CCGuCGa---GCCGCCu------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66528 0.71 0.14063
Target:  5'- cAGCGCGGCc---CGGCGGGCAcGGCg -3'
miRNA:   3'- -UCGCGCCGucgaGCCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 66487 0.69 0.221582
Target:  5'- --gGUGGCGGCUaggccuuggCGGCGGccuCGcGGGCCg -3'
miRNA:   3'- ucgCGCCGUCGA---------GCCGCCu--GU-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66265 0.66 0.331432
Target:  5'- cAGCGCGGCG--UCGucccaGCGGAC--GGCCa -3'
miRNA:   3'- -UCGCGCCGUcgAGC-----CGCCUGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65888 0.73 0.105495
Target:  5'- gAGCGCGGCGcGCaggUUGGCcacCAGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CG---AGCCGccuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65831 0.66 0.331432
Target:  5'- aGGCGCaccauCAGCaggCGGuuGugGGGGCCg -3'
miRNA:   3'- -UCGCGcc---GUCGa--GCCgcCugUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65709 0.7 0.172609
Target:  5'- uGCGCGcCAGCUCGGCcuGguGGGCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGccUguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 65331 0.71 0.159919
Target:  5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3'
miRNA:   3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 64934 0.75 0.080872
Target:  5'- uGGCgGCGGUgAGCgccUGGCGGGCGGuGGCCc -3'
miRNA:   3'- -UCG-CGCCG-UCGa--GCCGCCUGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 63925 0.67 0.288605
Target:  5'- cGGCGUGGCugAGCUUgGGCGaGACGgcgaacaccguGGuGCCg -3'
miRNA:   3'- -UCGCGCCG--UCGAG-CCGC-CUGU-----------CC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 63839 0.66 0.323981
Target:  5'- uGGCGCGGCGcacGCUgucggugccacgUGcGCGGugGcGGCCu -3'
miRNA:   3'- -UCGCGCCGU---CGA------------GC-CGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 63693 0.68 0.258805
Target:  5'- cAGCGCGGCGGCgcuGGCGaucuccugccagcguGccaACAGGGUg -3'
miRNA:   3'- -UCGCGCCGUCGag-CCGC---------------C---UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 63525 0.7 0.172609
Target:  5'- uGGCGUcGCAGCUC-GCGGGCGuGGCg -3'
miRNA:   3'- -UCGCGcCGUCGAGcCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 63220 0.66 0.339009
Target:  5'- cGGCcacCGGCGGCUCGuugcCGGGCGucGGCCc -3'
miRNA:   3'- -UCGc--GCCGUCGAGCc---GCCUGUc-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 63005 0.7 0.181562
Target:  5'- uGGCGCGauagacCAGCUCGGCcucCGGGGUCg -3'
miRNA:   3'- -UCGCGCc-----GUCGAGCCGccuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 62951 0.69 0.219955
Target:  5'- cGGCGCgcgccgacgaugguGGCGuGCUCGGUGGugcGCAcGuGGCCg -3'
miRNA:   3'- -UCGCG--------------CCGU-CGAGCCGCC---UGU-C-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 62894 0.7 0.181105
Target:  5'- uGGC-CGcCAGCUCGGCGGGguuacggUAGcGGCCa -3'
miRNA:   3'- -UCGcGCcGUCGAGCCGCCU-------GUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 61792 0.7 0.190924
Target:  5'- uGCGCGcCAGCUCGGCcccgucGGCAggcGGGUCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGc-----CUGU---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.