miRNA display CGI


Results 21 - 40 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 61445 0.68 0.24428
Target:  5'- cGGCGCGGCcaGGUUggaccgccCGGUGGcCAGcgcGGCCa -3'
miRNA:   3'- -UCGCGCCG--UCGA--------GCCGCCuGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 61335 0.7 0.181562
Target:  5'- cAGCGCGGCGuGgUUGGUcaGCuGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CgAGCCGccUGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60288 0.77 0.053968
Target:  5'- uGCGUGGCccGGUccUCGGCGGccucCAGGGCCu -3'
miRNA:   3'- uCGCGCCG--UCG--AGCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60234 0.69 0.216196
Target:  5'- uGCGCGGCuGUUCGGUGG-CGGucacugcuGGaCCa -3'
miRNA:   3'- uCGCGCCGuCGAGCCGCCuGUC--------CC-GG- -5'
19102 5' -64.2 NC_004684.1 + 60150 0.68 0.242512
Target:  5'- uGGCguaGCGGauuuGCUCGGCGGugGcaguguaggggagcGGGUCg -3'
miRNA:   3'- -UCG---CGCCgu--CGAGCCGCCugU--------------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60071 0.73 0.117198
Target:  5'- cGGCcCGGCGGCcCGuGCGGGCcuucaccGGGCCa -3'
miRNA:   3'- -UCGcGCCGUCGaGC-CGCCUGu------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 59866 0.66 0.331432
Target:  5'- --gGCGGcCAGgUCGGUccGGGCAGGuCCa -3'
miRNA:   3'- ucgCGCC-GUCgAGCCG--CCUGUCCcGG- -5'
19102 5' -64.2 NC_004684.1 + 58756 0.67 0.287929
Target:  5'- cGGCGgGGguGCcgaggaUCGGCGGugccgguGCAccGGGCUu -3'
miRNA:   3'- -UCGCgCCguCG------AGCCGCC-------UGU--CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 58603 0.67 0.288605
Target:  5'- uGCGCGGUgcuuugaucgacGGCccgUGGCGGcuggugccgcGCuGGGCCu -3'
miRNA:   3'- uCGCGCCG------------UCGa--GCCGCC----------UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57589 0.72 0.137037
Target:  5'- gAGCGuCGGguGCcacCGGC--GCAGGGCCu -3'
miRNA:   3'- -UCGC-GCCguCGa--GCCGccUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57542 0.7 0.171301
Target:  5'- --gGCGGCAGCUcaccggCGGCGGugaucgacggcaagACGGuGGCCu -3'
miRNA:   3'- ucgCGCCGUCGA------GCCGCC--------------UGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 57384 0.67 0.281905
Target:  5'- cGCGCGGCAGgUcCGGCaguuccGGcaACGGGauGCCg -3'
miRNA:   3'- uCGCGCCGUCgA-GCCG------CC--UGUCC--CGG- -5'
19102 5' -64.2 NC_004684.1 + 57255 0.66 0.334448
Target:  5'- cGgGCGGCaccgucggcccgcacAGCUCGGCcuguGACGGcGaGCCg -3'
miRNA:   3'- uCgCGCCG---------------UCGAGCCGc---CUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 57232 0.71 0.144309
Target:  5'- gAGCGCGGUGGCcagCGGCGG-Cu-GGCUg -3'
miRNA:   3'- -UCGCGCCGUCGa--GCCGCCuGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57137 0.74 0.092409
Target:  5'- uGGCGCGGCuGGUUCgccuccauGGCGG-CGGuGGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGAG--------CCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 57061 0.67 0.301679
Target:  5'- cAGCGCGGUGGCa-GGCaccaccuGGAacgaGGuGGCCg -3'
miRNA:   3'- -UCGCGCCGUCGagCCG-------CCUg---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 56809 0.72 0.133528
Target:  5'- cGCGCGccgaacCAGCcggaUCGGCGGGgaacgcCAGGGCCu -3'
miRNA:   3'- uCGCGCc-----GUCG----AGCCGCCU------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 56089 0.7 0.177036
Target:  5'- uGUGCGGCAuGCU-GGCGGugGCGGuGGCa -3'
miRNA:   3'- uCGCGCCGU-CGAgCCGCC--UGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 55834 0.66 0.346711
Target:  5'- -uCGCGGUAGCcgCuGUGGuuGCGGGGCg -3'
miRNA:   3'- ucGCGCCGUCGa-GcCGCC--UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 55723 0.66 0.354537
Target:  5'- uGCGCGGCGGUcacgUUGGCcgccgugcuGGCGuGGCCg -3'
miRNA:   3'- uCGCGCCGUCG----AGCCGc--------CUGUcCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.