miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 55593 0.67 0.275328
Target:  5'- cGCGCccuucuccacGGUGGCcuggUCGGCccACGGGGCCa -3'
miRNA:   3'- uCGCG----------CCGUCG----AGCCGccUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 55311 0.72 0.136682
Target:  5'- cGCGCGGgccagcaccucguCGcGCUCGGCGGcCAGGcgaGCCg -3'
miRNA:   3'- uCGCGCC-------------GU-CGAGCCGCCuGUCC---CGG- -5'
19102 5' -64.2 NC_004684.1 + 54525 0.78 0.048407
Target:  5'- --gGCGGCGGcCUCGGCGGugGcGGCCu -3'
miRNA:   3'- ucgCGCCGUC-GAGCCGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 54345 0.77 0.053822
Target:  5'- cAGCGCGGCGGUggagaugUUGGCaagugccggGGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGUCG-------AGCCG---------CCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 53097 0.7 0.189493
Target:  5'- uGCGCGGCGGCcUGcaaggccacaucacGCGGGUAGGuGCCg -3'
miRNA:   3'- uCGCGCCGUCGaGC--------------CGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 52903 0.68 0.256336
Target:  5'- gAGCGUccGGcCAGCaCGGCGG-CGuGGCCg -3'
miRNA:   3'- -UCGCG--CC-GUCGaGCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 52577 0.7 0.168282
Target:  5'- cGGCGCGccccaCAGUcCGGUGGACAGcGcGCCg -3'
miRNA:   3'- -UCGCGCc----GUCGaGCCGCCUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 52504 0.66 0.346711
Target:  5'- aGGUGUccaGGUUCuGCGGACGGGuGCCg -3'
miRNA:   3'- -UCGCGccgUCGAGcCGCCUGUCC-CGG- -5'
19102 5' -64.2 NC_004684.1 + 52147 0.68 0.258805
Target:  5'- uGCGUGGCAGC--GGCGGGCcguagcuguccggguAggcgaaccGGGCCa -3'
miRNA:   3'- uCGCGCCGUCGagCCGCCUG---------------U--------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 51580 0.67 0.29543
Target:  5'- uGCGCGGCGGCgaccgGGUGGucCAaGGUCu -3'
miRNA:   3'- uCGCGCCGUCGag---CCGCCu-GUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 49547 0.66 0.309455
Target:  5'- uGCGCGGUGGCcgacuUCgGGCuGGCGuGGCCu -3'
miRNA:   3'- uCGCGCCGUCG-----AG-CCGcCUGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 49171 0.76 0.06701
Target:  5'- cGGCGCagucucGGCGGCggCGGCGG-CGGcGGCCu -3'
miRNA:   3'- -UCGCG------CCGUCGa-GCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 49066 0.68 0.250248
Target:  5'- gGGgGCGGCAcCggCGuGCGGAaCAGGGUg -3'
miRNA:   3'- -UCgCGCCGUcGa-GC-CGCCU-GUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 49036 0.66 0.323981
Target:  5'- cGGCGCaGGCuccuccucCUCGGCaGGCucGGCCa -3'
miRNA:   3'- -UCGCG-CCGuc------GAGCCGcCUGucCCGG- -5'
19102 5' -64.2 NC_004684.1 + 48931 0.72 0.129765
Target:  5'- aGGCcCGGCcucgucgccgaacGGCacgUCGGCGGGCGGGGUg -3'
miRNA:   3'- -UCGcGCCG-------------UCG---AGCCGCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 48120 0.71 0.155879
Target:  5'- cAG-GUGGCuccGGCUcCGGCGG-CAGGGCa -3'
miRNA:   3'- -UCgCGCCG---UCGA-GCCGCCuGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 47905 0.66 0.323981
Target:  5'- cAGCaGCGGCuGGCUCcaggGGCGcaugucGCGcGGGCCa -3'
miRNA:   3'- -UCG-CGCCG-UCGAG----CCGCc-----UGU-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 47141 0.71 0.151542
Target:  5'- uGGCguagGCGGCcccggugcccaggAGCaccguagCGGCGGcCAGGGCCg -3'
miRNA:   3'- -UCG----CGCCG-------------UCGa------GCCGCCuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 46600 0.7 0.172609
Target:  5'- uGGCGuuGCGuGC-CGGUGGcuuCGGGGCCa -3'
miRNA:   3'- -UCGCgcCGU-CGaGCCGCCu--GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 46434 0.73 0.108313
Target:  5'- cGGCGCaucuggaacaGCAGUUCGGCgcgguGGGcCAGGGCCa -3'
miRNA:   3'- -UCGCGc---------CGUCGAGCCG-----CCU-GUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.