miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 65331 0.71 0.159919
Target:  5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3'
miRNA:   3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60071 0.73 0.117198
Target:  5'- cGGCcCGGCGGCcCGuGCGGGCcuucaccGGGCCa -3'
miRNA:   3'- -UCGcGCCGUCGaGC-CGCCUGu------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10700 0.72 0.123494
Target:  5'- gGGaCGCGGUGGCUcgcaacCGGCaGGGCAGccaGGCCg -3'
miRNA:   3'- -UC-GCGCCGUCGA------GCCG-CCUGUC---CCGG- -5'
19102 5' -64.2 NC_004684.1 + 48931 0.72 0.129765
Target:  5'- aGGCcCGGCcucgucgccgaacGGCacgUCGGCGGGCGGGGUg -3'
miRNA:   3'- -UCGcGCCG-------------UCG---AGCCGCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 40356 0.72 0.137037
Target:  5'- uGGCgGCGGCcuuggccuugggGGcCUCGGCGGugGcGGCCu -3'
miRNA:   3'- -UCG-CGCCG------------UC-GAGCCGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66528 0.71 0.14063
Target:  5'- cAGCGCGGCc---CGGCGGGCAcGGCg -3'
miRNA:   3'- -UCGCGCCGucgaGCCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 66899 0.71 0.144309
Target:  5'- cGGCGCGGCc-UUCGGCGcGGCcuuGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGucGAGCCGC-CUG---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 47141 0.71 0.151542
Target:  5'- uGGCguagGCGGCcccggugcccaggAGCaccguagCGGCGGcCAGGGCCg -3'
miRNA:   3'- -UCG----CGCCG-------------UCGa------GCCGCCuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27797 0.71 0.155879
Target:  5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3'
miRNA:   3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 46434 0.73 0.108313
Target:  5'- cGGCGCaucuggaacaGCAGUUCGGCgcgguGGGcCAGGGCCa -3'
miRNA:   3'- -UCGCGc---------CGUCGAGCCG-----CCU-GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 11519 0.73 0.108313
Target:  5'- ---cCGGCAccGCUCGGUGGGCcuGGGCCa -3'
miRNA:   3'- ucgcGCCGU--CGAGCCGCCUGu-CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65888 0.73 0.105495
Target:  5'- gAGCGCGGCGcGCaggUUGGCcacCAGGGCCg -3'
miRNA:   3'- -UCGCGCCGU-CG---AGCCGccuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 54345 0.77 0.053822
Target:  5'- cAGCGCGGCGGUggagaugUUGGCaagugccggGGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGUCG-------AGCCG---------CCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60288 0.77 0.053968
Target:  5'- uGCGUGGCccGGUccUCGGCGGccucCAGGGCCu -3'
miRNA:   3'- uCGCGCCG--UCG--AGCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 33817 0.77 0.058383
Target:  5'- cGGCGuCGGCgggcggugugcccGGCggCGGCGGcaACGGGGCCa -3'
miRNA:   3'- -UCGC-GCCG-------------UCGa-GCCGCC--UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 49171 0.76 0.06701
Target:  5'- cGGCGCagucucGGCGGCggCGGCGG-CGGcGGCCu -3'
miRNA:   3'- -UCGCG------CCGUCGa-GCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 22389 0.75 0.07748
Target:  5'- cGUGCaGGCGGCgUCGGCGGauuccuaaccagcccGCuGGGCCu -3'
miRNA:   3'- uCGCG-CCGUCG-AGCCGCC---------------UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 64934 0.75 0.080872
Target:  5'- uGGCgGCGGUgAGCgccUGGCGGGCGGuGGCCc -3'
miRNA:   3'- -UCG-CGCCG-UCGa--GCCGCCUGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 33477 0.74 0.087617
Target:  5'- --gGCGGCGGCUgCGGUGGACGcGGCg -3'
miRNA:   3'- ucgCGCCGUCGA-GCCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 57137 0.74 0.092409
Target:  5'- uGGCGCGGCuGGUUCgccuccauGGCGG-CGGuGGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGAG--------CCGCCuGUC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.