miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 22389 0.75 0.07748
Target:  5'- cGUGCaGGCGGCgUCGGCGGauuccuaaccagcccGCuGGGCCu -3'
miRNA:   3'- uCGCG-CCGUCG-AGCCGCC---------------UGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 49171 0.76 0.06701
Target:  5'- cGGCGCagucucGGCGGCggCGGCGG-CGGcGGCCu -3'
miRNA:   3'- -UCGCG------CCGUCGa-GCCGCCuGUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 33817 0.77 0.058383
Target:  5'- cGGCGuCGGCgggcggugugcccGGCggCGGCGGcaACGGGGCCa -3'
miRNA:   3'- -UCGC-GCCG-------------UCGa-GCCGCC--UGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 60288 0.77 0.053968
Target:  5'- uGCGUGGCccGGUccUCGGCGGccucCAGGGCCu -3'
miRNA:   3'- uCGCGCCG--UCG--AGCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 54345 0.77 0.053822
Target:  5'- cAGCGCGGCGGUggagaugUUGGCaagugccggGGGCGGGGUCg -3'
miRNA:   3'- -UCGCGCCGUCG-------AGCCG---------CCUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 48931 0.72 0.129765
Target:  5'- aGGCcCGGCcucgucgccgaacGGCacgUCGGCGGGCGGGGUg -3'
miRNA:   3'- -UCGcGCCG-------------UCG---AGCCGCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 40356 0.72 0.137037
Target:  5'- uGGCgGCGGCcuuggccuugggGGcCUCGGCGGugGcGGCCu -3'
miRNA:   3'- -UCG-CGCCG------------UC-GAGCCGCCugUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 10235 0.7 0.176588
Target:  5'- uGCGCGaGCAGCUggccgugCGcGUGGAgcGGGCCa -3'
miRNA:   3'- uCGCGC-CGUCGA-------GC-CGCCUguCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 65709 0.7 0.172609
Target:  5'- uGCGCGcCAGCUCGGCcuGguGGGCg -3'
miRNA:   3'- uCGCGCcGUCGAGCCGccUguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 63525 0.7 0.172609
Target:  5'- uGGCGUcGCAGCUC-GCGGGCGuGGCg -3'
miRNA:   3'- -UCGCGcCGUCGAGcCGCCUGUcCCGg -5'
19102 5' -64.2 NC_004684.1 + 27982 0.7 0.172609
Target:  5'- gAGUGCGG-AGUUCGGCGGcguCuGGGUg -3'
miRNA:   3'- -UCGCGCCgUCGAGCCGCCu--GuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 10794 0.7 0.168282
Target:  5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3'
miRNA:   3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 25653 0.7 0.168282
Target:  5'- gAGaGCGGCGGCgguacCGGGCAGGGCg -3'
miRNA:   3'- -UCgCGCCGUCGagcc-GCCUGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 40732 0.71 0.164053
Target:  5'- cAGCGCGGCGGgggCGGUGG-CGGuGGUg -3'
miRNA:   3'- -UCGCGCCGUCga-GCCGCCuGUC-CCGg -5'
19102 5' -64.2 NC_004684.1 + 6160 0.71 0.159919
Target:  5'- cGGCgGCGGcCAGCgugCGGCGGuagGCAccGGGCa -3'
miRNA:   3'- -UCG-CGCC-GUCGa--GCCGCC---UGU--CCCGg -5'
19102 5' -64.2 NC_004684.1 + 65331 0.71 0.159919
Target:  5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3'
miRNA:   3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 27797 0.71 0.155879
Target:  5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3'
miRNA:   3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5'
19102 5' -64.2 NC_004684.1 + 47141 0.71 0.151542
Target:  5'- uGGCguagGCGGCcccggugcccaggAGCaccguagCGGCGGcCAGGGCCg -3'
miRNA:   3'- -UCG----CGCCG-------------UCGa------GCCGCCuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 66899 0.71 0.144309
Target:  5'- cGGCGCGGCc-UUCGGCGcGGCcuuGGcGGCCa -3'
miRNA:   3'- -UCGCGCCGucGAGCCGC-CUG---UC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 66528 0.71 0.14063
Target:  5'- cAGCGCGGCc---CGGCGGGCAcGGCg -3'
miRNA:   3'- -UCGCGCCGucgaGCCGCCUGUcCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.