Results 61 - 80 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19102 | 5' | -64.2 | NC_004684.1 | + | 27797 | 0.71 | 0.155879 |
Target: 5'- uGCGCGGCGGUUCGGUccuGGccugcuccuGguGGGCg -3' miRNA: 3'- uCGCGCCGUCGAGCCG---CC---------UguCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 65331 | 0.71 | 0.159919 |
Target: 5'- cAGCGCcaGGCAgGCcacgaUGGCGGccccCAGGGCCa -3' miRNA: 3'- -UCGCG--CCGU-CGa----GCCGCCu---GUCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 43498 | 0.7 | 0.181562 |
Target: 5'- cGCaGCGGCAGCaggugcagCGGCagGGGCGGGaGCg -3' miRNA: 3'- uCG-CGCCGUCGa-------GCCG--CCUGUCC-CGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 53097 | 0.7 | 0.189493 |
Target: 5'- uGCGCGGCGGCcUGcaaggccacaucacGCGGGUAGGuGCCg -3' miRNA: 3'- uCGCGCCGUCGaGC--------------CGCCUGUCC-CGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 2264 | 0.7 | 0.190446 |
Target: 5'- cAGCGCGGC-----GGCGGGCAuugccgccagccuGGGCCa -3' miRNA: 3'- -UCGCGCCGucgagCCGCCUGU-------------CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 61792 | 0.7 | 0.190924 |
Target: 5'- uGCGCGcCAGCUCGGCcccgucGGCAggcGGGUCg -3' miRNA: 3'- uCGCGCcGUCGAGCCGc-----CUGU---CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 6215 | 0.69 | 0.200707 |
Target: 5'- cGGCGCgaucucGGcCAGCUgGGCGGcCA-GGCCu -3' miRNA: 3'- -UCGCG------CC-GUCGAgCCGCCuGUcCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 23737 | 0.69 | 0.200707 |
Target: 5'- cGCugGCGGCGcacuGCUCGGUGcGCAguucGGGCCg -3' miRNA: 3'- uCG--CGCCGU----CGAGCCGCcUGU----CCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 22348 | 0.69 | 0.205759 |
Target: 5'- cAG-GCGGUGGCggCGGCGG-CGGcGGUCg -3' miRNA: 3'- -UCgCGCCGUCGa-GCCGCCuGUC-CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 33707 | 0.69 | 0.213018 |
Target: 5'- cGCcaGCGGCAGCggCGGUGGcccgaacuacucgacGCAGcgcGGCCa -3' miRNA: 3'- uCG--CGCCGUCGa-GCCGCC---------------UGUC---CCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 56089 | 0.7 | 0.177036 |
Target: 5'- uGUGCGGCAuGCU-GGCGGugGCGGuGGCa -3' miRNA: 3'- uCGCGCCGU-CGAgCCGCC--UGUC-CCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 1208 | 0.7 | 0.177036 |
Target: 5'- aAGCGCGGCgucgacuucgucGGcCUCGGCGG-CcuGGUCg -3' miRNA: 3'- -UCGCGCCG------------UC-GAGCCGCCuGucCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 6160 | 0.71 | 0.159919 |
Target: 5'- cGGCgGCGGcCAGCgugCGGCGGuagGCAccGGGCa -3' miRNA: 3'- -UCG-CGCC-GUCGa--GCCGCC---UGU--CCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 40732 | 0.71 | 0.164053 |
Target: 5'- cAGCGCGGCGGgggCGGUGG-CGGuGGUg -3' miRNA: 3'- -UCGCGCCGUCga-GCCGCCuGUC-CCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 25653 | 0.7 | 0.168282 |
Target: 5'- gAGaGCGGCGGCgguacCGGGCAGGGCg -3' miRNA: 3'- -UCgCGCCGUCGagcc-GCCUGUCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 10794 | 0.7 | 0.168282 |
Target: 5'- cGGCGuCGGCaccguAGCggcaucCGGCGG-CuGGGCCg -3' miRNA: 3'- -UCGC-GCCG-----UCGa-----GCCGCCuGuCCCGG- -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 27982 | 0.7 | 0.172609 |
Target: 5'- gAGUGCGG-AGUUCGGCGGcguCuGGGUg -3' miRNA: 3'- -UCGCGCCgUCGAGCCGCCu--GuCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 63525 | 0.7 | 0.172609 |
Target: 5'- uGGCGUcGCAGCUC-GCGGGCGuGGCg -3' miRNA: 3'- -UCGCGcCGUCGAGcCGCCUGUcCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 65709 | 0.7 | 0.172609 |
Target: 5'- uGCGCGcCAGCUCGGCcuGguGGGCg -3' miRNA: 3'- uCGCGCcGUCGAGCCGccUguCCCGg -5' |
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19102 | 5' | -64.2 | NC_004684.1 | + | 10235 | 0.7 | 0.176588 |
Target: 5'- uGCGCGaGCAGCUggccgugCGcGUGGAgcGGGCCa -3' miRNA: 3'- uCGCGC-CGUCGA-------GC-CGCCUguCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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