miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19102 5' -64.2 NC_004684.1 + 17999 0.68 0.232698
Target:  5'- uGGCGCugaccgaguacGGCGGCaacaUCGGCaaggccauGGACAgccuGGGCCu -3'
miRNA:   3'- -UCGCG-----------CCGUCG----AGCCG--------CCUGU----CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 9826 0.71 0.151932
Target:  5'- gGGCGaugucggccaacCGGCgcAGCUCGGCGGuCGcgcucuggaggcGGGCCa -3'
miRNA:   3'- -UCGC------------GCCG--UCGAGCCGCCuGU------------CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 39317 0.78 0.048407
Target:  5'- cGCGCGGCGGCcCGGCcacaccGcCGGGGCCg -3'
miRNA:   3'- uCGCGCCGUCGaGCCGc-----CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 28519 0.69 0.229315
Target:  5'- cAGCGUGGCGGCguugaacCGcGCGuaaucgguguugagcGcCAGGGCCa -3'
miRNA:   3'- -UCGCGCCGUCGa------GC-CGC---------------CuGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 353 0.79 0.035841
Target:  5'- uGCGCaGCAGCUCGGUGGcCA-GGCCa -3'
miRNA:   3'- uCGCGcCGUCGAGCCGCCuGUcCCGG- -5'
19102 5' -64.2 NC_004684.1 + 57384 0.67 0.281905
Target:  5'- cGCGCGGCAGgUcCGGCaguuccGGcaACGGGauGCCg -3'
miRNA:   3'- uCGCGCCGUCgA-GCCG------CC--UGUCC--CGG- -5'
19102 5' -64.2 NC_004684.1 + 8920 0.76 0.067737
Target:  5'- gGGCGCGGCaAGUUCGcgcuggccucaGCGGGCagucggguccggcacGGGGCCg -3'
miRNA:   3'- -UCGCGCCG-UCGAGC-----------CGCCUG---------------UCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 5329 0.67 0.275328
Target:  5'- cGUGCaGCAGUgggUGGCGGu--GGGCUg -3'
miRNA:   3'- uCGCGcCGUCGa--GCCGCCuguCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 63693 0.68 0.258805
Target:  5'- cAGCGCGGCGGCgcuGGCGaucuccugccagcguGccaACAGGGUg -3'
miRNA:   3'- -UCGCGCCGUCGag-CCGC---------------C---UGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 29769 0.68 0.250248
Target:  5'- cAGCGCaccgacGGC-GUUCGGCauGGGCGgccGGGCCc -3'
miRNA:   3'- -UCGCG------CCGuCGAGCCG--CCUGU---CCCGG- -5'
19102 5' -64.2 NC_004684.1 + 15581 0.68 0.24428
Target:  5'- cAGCGCGcGCGGCcUGGCcguGGACcGGGaCUa -3'
miRNA:   3'- -UCGCGC-CGUCGaGCCG---CCUGuCCC-GG- -5'
19102 5' -64.2 NC_004684.1 + 66684 0.68 0.23843
Target:  5'- gAGCGCcaGGCcGUccacCGGCGGcugaccuCGGGGCCg -3'
miRNA:   3'- -UCGCG--CCGuCGa---GCCGCCu------GUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 24990 0.68 0.23843
Target:  5'- cGCGuCGGC-GCgUUGGgGucGGCGGGGCCg -3'
miRNA:   3'- uCGC-GCCGuCG-AGCCgC--CUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 7708 0.69 0.195762
Target:  5'- -cCGC-GCAGCUCGGCgcaGGAaAGGGUCa -3'
miRNA:   3'- ucGCGcCGUCGAGCCG---CCUgUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 62894 0.7 0.181105
Target:  5'- uGGC-CGcCAGCUCGGCGGGguuacggUAGcGGCCa -3'
miRNA:   3'- -UCGcGCcGUCGAGCCGCCU-------GUC-CCGG- -5'
19102 5' -64.2 NC_004684.1 + 52577 0.7 0.168282
Target:  5'- cGGCGCGccccaCAGUcCGGUGGACAGcGcGCCg -3'
miRNA:   3'- -UCGCGCc----GUCGaGCCGCCUGUC-C-CGG- -5'
19102 5' -64.2 NC_004684.1 + 48120 0.71 0.155879
Target:  5'- cAG-GUGGCuccGGCUcCGGCGG-CAGGGCa -3'
miRNA:   3'- -UCgCGCCG---UCGA-GCCGCCuGUCCCGg -5'
19102 5' -64.2 NC_004684.1 + 57589 0.72 0.137037
Target:  5'- gAGCGuCGGguGCcacCGGC--GCAGGGCCu -3'
miRNA:   3'- -UCGC-GCCguCGa--GCCGccUGUCCCGG- -5'
19102 5' -64.2 NC_004684.1 + 4029 0.72 0.133528
Target:  5'- cGCGuCGGCcGCUCGGUGcGCuGGGCg -3'
miRNA:   3'- uCGC-GCCGuCGAGCCGCcUGuCCCGg -5'
19102 5' -64.2 NC_004684.1 + 41254 0.73 0.099535
Target:  5'- uGCGCGGcCAGCgaggugcuggugCGGuCGGACAGcGCCg -3'
miRNA:   3'- uCGCGCC-GUCGa-----------GCC-GCCUGUCcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.