miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19103 3' -55.9 NC_004684.1 + 19765 0.66 0.751144
Target:  5'- cGCGGCcUGcCGGUgCCCGCCGgGgGCGa -3'
miRNA:   3'- -UGUUGuAC-GUCA-GGGCGGUgCaCGCg -5'
19103 3' -55.9 NC_004684.1 + 54568 0.66 0.751144
Target:  5'- uCGGCA-GCAGagCCGCCGuccuCGgGCGCg -3'
miRNA:   3'- uGUUGUaCGUCagGGCGGU----GCaCGCG- -5'
19103 3' -55.9 NC_004684.1 + 45207 0.66 0.751144
Target:  5'- cCGAag-GCGGUCgCCGCCGcCGUG-GCc -3'
miRNA:   3'- uGUUguaCGUCAG-GGCGGU-GCACgCG- -5'
19103 3' -55.9 NC_004684.1 + 56788 0.66 0.751144
Target:  5'- gGCAACG-GCAGUUgCGCaccuCGcGCGCc -3'
miRNA:   3'- -UGUUGUaCGUCAGgGCGgu--GCaCGCG- -5'
19103 3' -55.9 NC_004684.1 + 46173 0.66 0.751144
Target:  5'- uACAuCGUgGCGGUgaaCCCGCacagguagGCGUGCGUa -3'
miRNA:   3'- -UGUuGUA-CGUCA---GGGCGg-------UGCACGCG- -5'
19103 3' -55.9 NC_004684.1 + 33287 0.66 0.751144
Target:  5'- --cGCGUGCAGUCUgCGCacuCGCGUuguucGCGCc -3'
miRNA:   3'- uguUGUACGUCAGG-GCG---GUGCA-----CGCG- -5'
19103 3' -55.9 NC_004684.1 + 41694 0.66 0.751144
Target:  5'- -gGGCAUGcCAGcUgCGCCACGcGCGUu -3'
miRNA:   3'- ugUUGUAC-GUCaGgGCGGUGCaCGCG- -5'
19103 3' -55.9 NC_004684.1 + 62509 0.66 0.751144
Target:  5'- aGCGGCGggacuUGguGUCCCagucaGCCugGU-CGCu -3'
miRNA:   3'- -UGUUGU-----ACguCAGGG-----CGGugCAcGCG- -5'
19103 3' -55.9 NC_004684.1 + 56916 0.66 0.751144
Target:  5'- cCAuCGUGUccUCCUGCCugGaGCGCg -3'
miRNA:   3'- uGUuGUACGucAGGGCGGugCaCGCG- -5'
19103 3' -55.9 NC_004684.1 + 35762 0.66 0.740875
Target:  5'- -gGugGUGCAGaCCCaGCgCGCGccGCGCu -3'
miRNA:   3'- ugUugUACGUCaGGG-CG-GUGCa-CGCG- -5'
19103 3' -55.9 NC_004684.1 + 16210 0.66 0.740874
Target:  5'- -gGGCGcGCGGUCCaugGCC-CG-GCGCa -3'
miRNA:   3'- ugUUGUaCGUCAGGg--CGGuGCaCGCG- -5'
19103 3' -55.9 NC_004684.1 + 50482 0.66 0.740874
Target:  5'- uCAGCgAUGCuGUUCgGCgGUGUGCGCu -3'
miRNA:   3'- uGUUG-UACGuCAGGgCGgUGCACGCG- -5'
19103 3' -55.9 NC_004684.1 + 66091 0.66 0.740874
Target:  5'- ------cGCAuGUCCgGCCACGcgucGCGCg -3'
miRNA:   3'- uguuguaCGU-CAGGgCGGUGCa---CGCG- -5'
19103 3' -55.9 NC_004684.1 + 11662 0.66 0.730499
Target:  5'- cCAGCAcgGCGGccaacgugaCCGCCGCGcaagcagcUGCGCa -3'
miRNA:   3'- uGUUGUa-CGUCag-------GGCGGUGC--------ACGCG- -5'
19103 3' -55.9 NC_004684.1 + 15812 0.66 0.730498
Target:  5'- -gGACcaccCGGUCgCCGCCGCGcaGCGCg -3'
miRNA:   3'- ugUUGuac-GUCAG-GGCGGUGCa-CGCG- -5'
19103 3' -55.9 NC_004684.1 + 57386 0.66 0.730498
Target:  5'- cGCGGCAgguccgGCAGUUCCGgCaACGggaugccgaGCGCg -3'
miRNA:   3'- -UGUUGUa-----CGUCAGGGCgG-UGCa--------CGCG- -5'
19103 3' -55.9 NC_004684.1 + 55791 0.66 0.720026
Target:  5'- gGCGGCGUGaccggguGGUCCgGUgagCGCGUGCGa -3'
miRNA:   3'- -UGUUGUACg------UCAGGgCG---GUGCACGCg -5'
19103 3' -55.9 NC_004684.1 + 61922 0.66 0.720026
Target:  5'- cGCGGgGUGCGGgccacggcaCCCGCCGgGccugGUGCa -3'
miRNA:   3'- -UGUUgUACGUCa--------GGGCGGUgCa---CGCG- -5'
19103 3' -55.9 NC_004684.1 + 40480 0.66 0.720026
Target:  5'- ---cUcgGCGGUCUgCGCCGaGUGCGCc -3'
miRNA:   3'- uguuGuaCGUCAGG-GCGGUgCACGCG- -5'
19103 3' -55.9 NC_004684.1 + 22499 0.66 0.720026
Target:  5'- cCAACgGUGCcaccuGGUUCCGuCCG-GUGCGCg -3'
miRNA:   3'- uGUUG-UACG-----UCAGGGC-GGUgCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.