miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19103 5' -56.2 NC_004684.1 + 29448 0.66 0.751535
Target:  5'- uGGC-CU-CCACcGCGUCGAGCaGGGc -3'
miRNA:   3'- gCCGcGAuGGUGcCGUAGCUUGaCCU- -5'
19103 5' -56.2 NC_004684.1 + 60104 0.66 0.751535
Target:  5'- uGGUGC-AgUGCGGCGaUGAACUGGu -3'
miRNA:   3'- gCCGCGaUgGUGCCGUaGCUUGACCu -5'
19103 5' -56.2 NC_004684.1 + 36300 0.66 0.751535
Target:  5'- gCGGCGUccUGCCagcccucgGCGGCA-CGuucCUGGAu -3'
miRNA:   3'- -GCCGCG--AUGG--------UGCCGUaGCuu-GACCU- -5'
19103 5' -56.2 NC_004684.1 + 32318 0.66 0.751535
Target:  5'- cCGGUGCacaccaacgACCAuuCGGCGaCGAucacGCUGGAc -3'
miRNA:   3'- -GCCGCGa--------UGGU--GCCGUaGCU----UGACCU- -5'
19103 5' -56.2 NC_004684.1 + 15690 0.66 0.751535
Target:  5'- gCGGCgGCaccgacGCCAcCGGCAUCGuGCUcccGGAg -3'
miRNA:   3'- -GCCG-CGa-----UGGU-GCCGUAGCuUGA---CCU- -5'
19103 5' -56.2 NC_004684.1 + 18447 0.66 0.751535
Target:  5'- uGGCucccgaGCaggACgACGGCAcCGAGCUGGu -3'
miRNA:   3'- gCCG------CGa--UGgUGCCGUaGCUUGACCu -5'
19103 5' -56.2 NC_004684.1 + 61222 0.66 0.745441
Target:  5'- cCGGUGcCUACCGCcGCAcgcuggccgccgccgUCGAACUGc- -3'
miRNA:   3'- -GCCGC-GAUGGUGcCGU---------------AGCUUGACcu -5'
19103 5' -56.2 NC_004684.1 + 13902 0.66 0.741357
Target:  5'- aGGCGaucACCgACGGCcagAUCGAcaGCUGGc -3'
miRNA:   3'- gCCGCga-UGG-UGCCG---UAGCU--UGACCu -5'
19103 5' -56.2 NC_004684.1 + 28059 0.66 0.741357
Target:  5'- gGGCgGCcaaccgGCCugGGCG-CGGcaACUGGGg -3'
miRNA:   3'- gCCG-CGa-----UGGugCCGUaGCU--UGACCU- -5'
19103 5' -56.2 NC_004684.1 + 45236 0.66 0.741357
Target:  5'- gCGGUGCUccucggugauGCCAUGGaugcCGcGCUGGAc -3'
miRNA:   3'- -GCCGCGA----------UGGUGCCgua-GCuUGACCU- -5'
19103 5' -56.2 NC_004684.1 + 22623 0.66 0.740333
Target:  5'- aCGGCGCUgugggaggccgccGCCAgCGGCGaccccaaaGAcCUGGAg -3'
miRNA:   3'- -GCCGCGA-------------UGGU-GCCGUag------CUuGACCU- -5'
19103 5' -56.2 NC_004684.1 + 34160 0.66 0.731074
Target:  5'- aCGGUGCUGCuCAcCGGCAcgccCGAGCUc-- -3'
miRNA:   3'- -GCCGCGAUG-GU-GCCGUa---GCUUGAccu -5'
19103 5' -56.2 NC_004684.1 + 15306 0.66 0.731074
Target:  5'- uGGCGCga-CGCGGUGgcaacccgCGAagcACUGGAc -3'
miRNA:   3'- gCCGCGaugGUGCCGUa-------GCU---UGACCU- -5'
19103 5' -56.2 NC_004684.1 + 14789 0.66 0.731074
Target:  5'- uGGCGCacaACUACGGCggCGcGCUGu- -3'
miRNA:   3'- gCCGCGa--UGGUGCCGuaGCuUGACcu -5'
19103 5' -56.2 NC_004684.1 + 7501 0.66 0.731074
Target:  5'- -cGUGC-GCCGCcGCAUCGGGgUGGAc -3'
miRNA:   3'- gcCGCGaUGGUGcCGUAGCUUgACCU- -5'
19103 5' -56.2 NC_004684.1 + 1034 0.66 0.73004
Target:  5'- gCGGCGUgggGCCagaaaugGCGGCAcCGGuuguGCUGGc -3'
miRNA:   3'- -GCCGCGa--UGG-------UGCCGUaGCU----UGACCu -5'
19103 5' -56.2 NC_004684.1 + 4292 0.66 0.72797
Target:  5'- uGGUGCUGCCACacgagugggacgcgGuGCAcCGGgcgcACUGGAg -3'
miRNA:   3'- gCCGCGAUGGUG--------------C-CGUaGCU----UGACCU- -5'
19103 5' -56.2 NC_004684.1 + 25676 0.66 0.726933
Target:  5'- gGGCGCgACCuACGGCGgcaacgcgcguggCGcAGCUGGc -3'
miRNA:   3'- gCCGCGaUGG-UGCCGUa------------GC-UUGACCu -5'
19103 5' -56.2 NC_004684.1 + 14514 0.66 0.714428
Target:  5'- gGGUGCaUGCCAcCGGCAUguaccggugcaccaaCGAugacggcguaccGCUGGAc -3'
miRNA:   3'- gCCGCG-AUGGU-GCCGUA---------------GCU------------UGACCU- -5'
19103 5' -56.2 NC_004684.1 + 42556 0.66 0.710233
Target:  5'- uGGCGCUACCGCuGCcgCccuGugUGGu -3'
miRNA:   3'- gCCGCGAUGGUGcCGuaGc--UugACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.