Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 36390 | 0.67 | 0.845819 |
Target: 5'- -cCAGGCAcGCUCGCGGGCcuaccuccUCGAGCGc -3' miRNA: 3'- cuGUUCGUcUGGGCGUUCG--------AGUUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 34659 | 0.68 | 0.836891 |
Target: 5'- gGGCAuuauccGGCAGGCCaaCGCGAGCaaccccCAGACGc -3' miRNA: 3'- -CUGU------UCGUCUGG--GCGUUCGa-----GUUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 33938 | 0.68 | 0.836891 |
Target: 5'- --gAGGCAGACCacaGCGAGC-CAuucuGCGu -3' miRNA: 3'- cugUUCGUCUGGg--CGUUCGaGUu---UGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 19791 | 0.68 | 0.827738 |
Target: 5'- cGACAagauGGCGGGCCUGCuggccaagGAGUUCGucAGCGc -3' miRNA: 3'- -CUGU----UCGUCUGGGCG--------UUCGAGU--UUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 33890 | 0.68 | 0.808799 |
Target: 5'- uGCGGGCGGugCCGgUggGCgCGGACa -3' miRNA: 3'- cUGUUCGUCugGGC-GuuCGaGUUUGc -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 16962 | 0.69 | 0.793086 |
Target: 5'- uGCAAGCGGGCCUGCAccugcuGCUgguguaccccaacagCAAGCa -3' miRNA: 3'- cUGUUCGUCUGGGCGUu-----CGA---------------GUUUGc -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 66443 | 0.69 | 0.789086 |
Target: 5'- uGACccGCAGGCCCGCgAAGCgauUCAGGuCGu -3' miRNA: 3'- -CUGuuCGUCUGGGCG-UUCG---AGUUU-GC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 3860 | 0.69 | 0.768691 |
Target: 5'- -cCGAGCGccacGCCCGCGAGCUgcGACGc -3' miRNA: 3'- cuGUUCGUc---UGGGCGUUCGAguUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 2218 | 0.69 | 0.758267 |
Target: 5'- cGGCGGGaCGGACCCGCcagggaAGGCagAAAUGa -3' miRNA: 3'- -CUGUUC-GUCUGGGCG------UUCGagUUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 18478 | 0.69 | 0.747708 |
Target: 5'- gGGCcuGCGGACCCGCAcguGCU-GAACu -3' miRNA: 3'- -CUGuuCGUCUGGGCGUu--CGAgUUUGc -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 51112 | 0.7 | 0.737027 |
Target: 5'- cGACuGGCAGGCauggCCGCGAGCaUCugccGACGa -3' miRNA: 3'- -CUGuUCGUCUG----GGCGUUCG-AGu---UUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 15571 | 0.7 | 0.726235 |
Target: 5'- cGAgAAGCuGACCCGCGAgaagggggcgcGCUCGGuGCGc -3' miRNA: 3'- -CUgUUCGuCUGGGCGUU-----------CGAGUU-UGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 57162 | 0.7 | 0.726235 |
Target: 5'- cGGCGguGGCcGACgCGCAcGCUCGGGCGc -3' miRNA: 3'- -CUGU--UCGuCUGgGCGUuCGAGUUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 65970 | 0.7 | 0.715347 |
Target: 5'- gGAC-AGCGGGuCgCGCAGGCUCAGcCGc -3' miRNA: 3'- -CUGuUCGUCU-GgGCGUUCGAGUUuGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 43450 | 0.71 | 0.671053 |
Target: 5'- cGGCAGGCgGGugCCGCGcAGCUCcggGAAUGc -3' miRNA: 3'- -CUGUUCG-UCugGGCGU-UCGAG---UUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 52431 | 0.71 | 0.671053 |
Target: 5'- cGCAAGCGGACCUcgGCucGGCUCG-GCGc -3' miRNA: 3'- cUGUUCGUCUGGG--CGu-UCGAGUuUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 4825 | 0.72 | 0.614901 |
Target: 5'- gGACAAGCucGGCCUG-AAGCUgGAGCGu -3' miRNA: 3'- -CUGUUCGu-CUGGGCgUUCGAgUUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 62964 | 0.72 | 0.570193 |
Target: 5'- cGCcAGCAGGCCCGCGcguuGUUCcGGCGg -3' miRNA: 3'- cUGuUCGUCUGGGCGUu---CGAGuUUGC- -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 5532 | 0.73 | 0.537181 |
Target: 5'- cGACGAGUGGuCCCGCcAGGCUguGACc -3' miRNA: 3'- -CUGUUCGUCuGGGCG-UUCGAguUUGc -5' |
|||||||
19104 | 3' | -51.7 | NC_004684.1 | + | 57252 | 0.74 | 0.483776 |
Target: 5'- gGGCGGGCGGcaccgucgGCCCGCAcAGCUCGgccuguGACGg -3' miRNA: 3'- -CUGUUCGUC--------UGGGCGU-UCGAGU------UUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home