miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 361 0.66 0.332883
Target:  5'- aGCUCGGUGGccAGGCCauCGUGGuGCCGg -3'
miRNA:   3'- cCGGGCCACU--UCCGGgcGUGCC-CGGC- -5'
19105 5' -64.8 NC_004684.1 + 18403 0.66 0.332883
Target:  5'- gGGCCCGGccaGcAGGGCaCCGaCGCGcccgccccGGCCa -3'
miRNA:   3'- -CCGGGCCa--C-UUCCG-GGC-GUGC--------CCGGc -5'
19105 5' -64.8 NC_004684.1 + 54262 0.66 0.332883
Target:  5'- aGGCgCUGcGUGGAGaaGCugCCGCGCuGGCCGg -3'
miRNA:   3'- -CCG-GGC-CACUUC--CG--GGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 45395 0.66 0.332883
Target:  5'- cGGCCCcaUGGccuccuGGaCCGCGCGGGUCa -3'
miRNA:   3'- -CCGGGccACUu-----CCgGGCGUGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 44435 0.66 0.332883
Target:  5'- cGGCCCGGUGgcGuagucgaccaGCUugaGCACGcuGGCCa -3'
miRNA:   3'- -CCGGGCCACuuC----------CGGg--CGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 30603 0.66 0.332141
Target:  5'- cGCCCGcGUgugggcguucuucGAGGGagugaCCGCgacgGCGGGCCa -3'
miRNA:   3'- cCGGGC-CA-------------CUUCCg----GGCG----UGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 65342 0.66 0.325511
Target:  5'- aGGCCaCGaUGgcGGCCCcCA-GGGCCa -3'
miRNA:   3'- -CCGG-GCcACuuCCGGGcGUgCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 8668 0.66 0.325511
Target:  5'- uGCCCGGUGc-GGCCagguGCcUGuGGCCGu -3'
miRNA:   3'- cCGGGCCACuuCCGGg---CGuGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 2678 0.66 0.325511
Target:  5'- uGGaCCCGaUGGAGGCCCugGCGGccGCCa -3'
miRNA:   3'- -CC-GGGCcACUUCCGGGcgUGCC--CGGc -5'
19105 5' -64.8 NC_004684.1 + 40377 0.66 0.325511
Target:  5'- gGGCCucggCGGUGgcGGCCUucgGCA--GGCCGg -3'
miRNA:   3'- -CCGG----GCCACuuCCGGG---CGUgcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 60738 0.66 0.325511
Target:  5'- uGCCCGGcGAccGGGUggCCGC-CGGGUgGg -3'
miRNA:   3'- cCGGGCCaCU--UCCG--GGCGuGCCCGgC- -5'
19105 5' -64.8 NC_004684.1 + 58341 0.66 0.325511
Target:  5'- cGCCCGGUGGcccugcuGGCguugCCGCGcCGGuuGCCGc -3'
miRNA:   3'- cCGGGCCACUu------CCG----GGCGU-GCC--CGGC- -5'
19105 5' -64.8 NC_004684.1 + 46507 0.66 0.324781
Target:  5'- aGGCCagcuugccgaugaCGGUGGAcuuGCCUGCACcGGUCGg -3'
miRNA:   3'- -CCGG-------------GCCACUUc--CGGGCGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 8448 0.66 0.323323
Target:  5'- gGGCCCGGcGcAAGGCCUgGCuguuguccccggagGCGGGgUGg -3'
miRNA:   3'- -CCGGGCCaC-UUCCGGG-CG--------------UGCCCgGC- -5'
19105 5' -64.8 NC_004684.1 + 7093 0.66 0.318261
Target:  5'- aGGCCC--UGGAGG-CCGCcgaggacCGGGCCa -3'
miRNA:   3'- -CCGGGccACUUCCgGGCGu------GCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 27850 0.66 0.318261
Target:  5'- uGUCCGGcGAggauuAGGCCUGCACGcacGGCgGu -3'
miRNA:   3'- cCGGGCCaCU-----UCCGGGCGUGC---CCGgC- -5'
19105 5' -64.8 NC_004684.1 + 46324 0.66 0.316109
Target:  5'- cGGCCCaGGUGcccGGUCagcaccggcacccgUGCACGGGUCu -3'
miRNA:   3'- -CCGGG-CCACuu-CCGG--------------GCGUGCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 61219 0.66 0.311133
Target:  5'- uGCCCGGUGccuacCgCCGCACGcuGGCCGc -3'
miRNA:   3'- cCGGGCCACuucc-G-GGCGUGC--CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 39304 0.66 0.311133
Target:  5'- -aCCCGGUGcGGGUCgCGCGgCGGcCCGg -3'
miRNA:   3'- ccGGGCCACuUCCGG-GCGU-GCCcGGC- -5'
19105 5' -64.8 NC_004684.1 + 66337 0.66 0.311133
Target:  5'- cGuCCCGGUGAc-GCCgGgGCGGGCgGc -3'
miRNA:   3'- cC-GGGCCACUucCGGgCgUGCCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.