miRNA display CGI


Results 21 - 40 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 54838 0.66 0.766695
Target:  5'- uGACGugcGAgCGCCUggaGCGcgucgaugucgguGGGCAGCUCa -3'
miRNA:   3'- -CUGCuu-UUgGCGGA---CGU-------------UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 62889 0.66 0.757533
Target:  5'- cACGguGGCCGCCagcucgGCGGGGUuacgguagcGGCCa -3'
miRNA:   3'- cUGCuuUUGGCGGa-----CGUUCCG---------UCGGg -5'
19106 3' -55 NC_004684.1 + 31289 0.66 0.757533
Target:  5'- cGGCGGcuACCGCC-GUAccucggugaccGGGCAGaCCa -3'
miRNA:   3'- -CUGCUuuUGGCGGaCGU-----------UCCGUCgGG- -5'
19106 3' -55 NC_004684.1 + 55345 0.66 0.757533
Target:  5'- aGGCGA--GCCGCCUccugcuggucgaGCAuGGCcuuGGCCa -3'
miRNA:   3'- -CUGCUuuUGGCGGA------------CGUuCCG---UCGGg -5'
19106 3' -55 NC_004684.1 + 11668 0.66 0.757533
Target:  5'- cGGCGGccaacguGACCGCCgcGCAA-GCAGCUg -3'
miRNA:   3'- -CUGCUu------UUGGCGGa-CGUUcCGUCGGg -5'
19106 3' -55 NC_004684.1 + 5920 0.66 0.757533
Target:  5'- cACGAccggcuGGCCGCgCUGgcCAccGGGCGGUCCa -3'
miRNA:   3'- cUGCUu-----UUGGCG-GAC--GU--UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 505 0.66 0.757533
Target:  5'- aACGAcacgcuccugGAGCUG-CUGCAAGGCcuGGaCCCg -3'
miRNA:   3'- cUGCU----------UUUGGCgGACGUUCCG--UC-GGG- -5'
19106 3' -55 NC_004684.1 + 65679 0.66 0.757533
Target:  5'- cGCGGcacuGGCCgguGCCUGCcAGGUgcagguucgGGCCCg -3'
miRNA:   3'- cUGCUu---UUGG---CGGACGuUCCG---------UCGGG- -5'
19106 3' -55 NC_004684.1 + 54602 0.66 0.756509
Target:  5'- cGGCGggGguGCCguuguccucguugGCC-GCAGGcGCAGCCg -3'
miRNA:   3'- -CUGCuuU--UGG-------------CGGaCGUUC-CGUCGGg -5'
19106 3' -55 NC_004684.1 + 7962 0.66 0.747233
Target:  5'- gGugGGcaAGGCCGCC----AGGCGGCCg -3'
miRNA:   3'- -CugCU--UUUGGCGGacguUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 11156 0.66 0.745159
Target:  5'- cGGCGuugcgcaggcuGACCGCCUGCAuGcGCcGCUCc -3'
miRNA:   3'- -CUGCuu---------UUGGCGGACGUuC-CGuCGGG- -5'
19106 3' -55 NC_004684.1 + 30603 0.66 0.740997
Target:  5'- -cUGAccGAGCCGCCgccgaccagcgucgGCAccGGGCgcGGCCCu -3'
miRNA:   3'- cuGCU--UUUGGCGGa-------------CGU--UCCG--UCGGG- -5'
19106 3' -55 NC_004684.1 + 3524 0.66 0.736818
Target:  5'- cGACGGguGGGCCGaCCUggcggugcaagGCAAGGCAuUCCu -3'
miRNA:   3'- -CUGCU--UUUGGC-GGA-----------CGUUCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 44520 0.66 0.736818
Target:  5'- aGCGucuuGGCCGCCgu---GGUGGCCCg -3'
miRNA:   3'- cUGCuu--UUGGCGGacguuCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 67127 0.66 0.736818
Target:  5'- cACGAAGGCCucgccgucgGCCUGCAcgaugaucguGGCGGCg- -3'
miRNA:   3'- cUGCUUUUGG---------CGGACGUu---------CCGUCGgg -5'
19106 3' -55 NC_004684.1 + 2432 0.66 0.736818
Target:  5'- cGGCGAcaAGGCCgacaucGCCcGCcuGGGCGGCCa -3'
miRNA:   3'- -CUGCU--UUUGG------CGGaCGu-UCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 43225 0.66 0.736817
Target:  5'- cGGCGGc-ACCGCCUGCGgacccugcaccGGaGCGGUgCg -3'
miRNA:   3'- -CUGCUuuUGGCGGACGU-----------UC-CGUCGgG- -5'
19106 3' -55 NC_004684.1 + 45211 0.66 0.736817
Target:  5'- aGGCGGucGCCGCC-GCc--GUGGCCCu -3'
miRNA:   3'- -CUGCUuuUGGCGGaCGuucCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 7377 0.66 0.736817
Target:  5'- aGACGAGAccccCCGCCUGC---GCcGUCCa -3'
miRNA:   3'- -CUGCUUUu---GGCGGACGuucCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 26007 0.66 0.734721
Target:  5'- uGGCGGcgGCCggguucaacguGCCggacuucaccaaGCAAGGCGGCCa -3'
miRNA:   3'- -CUGCUuuUGG-----------CGGa-----------CGUUCCGUCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.