miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 7781 0.67 0.323184
Target:  5'- cCGuGGUCGAGCauUGGUGCGCgggaugugaccggGUGGUGc -3'
miRNA:   3'- uGCcCCGGCUCG--ACCGCGCG-------------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 4066 0.67 0.319474
Target:  5'- cCGGGuGaCCGGGUggUGGgacugucgaagcucuCGCGCGUGGUGc -3'
miRNA:   3'- uGCCC-C-GGCUCG--ACC---------------GCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 66043 0.67 0.31653
Target:  5'- aACGGGaGCuUGAGCgcgucGGCGUGCGUGa-- -3'
miRNA:   3'- -UGCCC-CG-GCUCGa----CCGCGCGUACcac -5'
19106 5' -63.4 NC_004684.1 + 4199 0.67 0.313606
Target:  5'- gAUGGGGCCGuucggccGCgucgagucgacccGGCGCGCAaccUGGUu -3'
miRNA:   3'- -UGCCCCGGCu------CGa------------CCGCGCGU---ACCAc -5'
19106 5' -63.4 NC_004684.1 + 26745 0.67 0.313606
Target:  5'- gGCGGGGCCaGGCccccaaguucgucGGcCGCGCGgcGGUGa -3'
miRNA:   3'- -UGCCCCGGcUCGa------------CC-GCGCGUa-CCAC- -5'
19106 5' -63.4 NC_004684.1 + 5765 0.67 0.309259
Target:  5'- -gGGGGuUCGA-CUGGCccaaGUGCGUGGUGu -3'
miRNA:   3'- ugCCCC-GGCUcGACCG----CGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 7605 0.67 0.286171
Target:  5'- gGCGGuguucgccuccuGGCCGGucgagagccagcucGCcgUGGCGgGCGUGGUGa -3'
miRNA:   3'- -UGCC------------CCGGCU--------------CG--ACCGCgCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 66350 0.67 0.281452
Target:  5'- cCGGGG-CGGGCggccagGGCGaCGCG-GGUGu -3'
miRNA:   3'- uGCCCCgGCUCGa-----CCGC-GCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 64755 0.67 0.281452
Target:  5'- ---uGGCCGAGCUGGUGCcagGCGUcGGUc -3'
miRNA:   3'- ugccCCGGCUCGACCGCG---CGUA-CCAc -5'
19106 5' -63.4 NC_004684.1 + 57006 0.68 0.274818
Target:  5'- cCGGGGaCGAGCgcgccaucggGGUGCGC-UGGUc -3'
miRNA:   3'- uGCCCCgGCUCGa---------CCGCGCGuACCAc -5'
19106 5' -63.4 NC_004684.1 + 48965 0.68 0.274818
Target:  5'- gGCGGGgugGCCgGGGCgGGCGCGUc-GGUGc -3'
miRNA:   3'- -UGCCC---CGG-CUCGaCCGCGCGuaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 55335 0.68 0.274818
Target:  5'- gACGGcuGGCagguGAGcCUGGCGCGCAUGc-- -3'
miRNA:   3'- -UGCC--CCGg---CUC-GACCGCGCGUACcac -5'
19106 5' -63.4 NC_004684.1 + 7729 0.68 0.255666
Target:  5'- -aGGGucaauGCgCGA-CUGGCGCGCAUGGg- -3'
miRNA:   3'- ugCCC-----CG-GCUcGACCGCGCGUACCac -5'
19106 5' -63.4 NC_004684.1 + 58959 0.69 0.237623
Target:  5'- cCGGGcccuguccGCCGAGCUGcCGCGC-UGGUu -3'
miRNA:   3'- uGCCC--------CGGCUCGACcGCGCGuACCAc -5'
19106 5' -63.4 NC_004684.1 + 4433 0.69 0.231849
Target:  5'- cGCGcGGGCCu-GCUGGCGCaGC-UGGa- -3'
miRNA:   3'- -UGC-CCCGGcuCGACCGCG-CGuACCac -5'
19106 5' -63.4 NC_004684.1 + 10111 0.69 0.226195
Target:  5'- uGCGGcucgccgucacaGGCCGAGCUGuGCGgGCcgacGGUGc -3'
miRNA:   3'- -UGCC------------CCGGCUCGAC-CGCgCGua--CCAC- -5'
19106 5' -63.4 NC_004684.1 + 35168 0.69 0.226195
Target:  5'- uCGGuGGCCGAGCcggaaccgGGUGUGCAguggaacugGGUGc -3'
miRNA:   3'- uGCC-CCGGCUCGa-------CCGCGCGUa--------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 23440 0.69 0.2131
Target:  5'- cACGGuGGCCGAucuGCUGGCcuccaugcccgacaGCGUgacggcgGUGGUGa -3'
miRNA:   3'- -UGCC-CCGGCU---CGACCG--------------CGCG-------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 6510 0.7 0.204736
Target:  5'- cUGGaGGCCGAGgaGGUGCGCAUc--- -3'
miRNA:   3'- uGCC-CCGGCUCgaCCGCGCGUAccac -5'
19106 5' -63.4 NC_004684.1 + 1757 0.7 0.194682
Target:  5'- uCGGGaCCgGAGCU-GCGCGCGUGGcUGg -3'
miRNA:   3'- uGCCCcGG-CUCGAcCGCGCGUACC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.