miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19107 3' -54.8 NC_004684.1 + 61362 0.66 0.828024
Target:  5'- cGCGAGGCGcugGCGGCcuaaAGgcCACCGc -3'
miRNA:   3'- cCGCUCCGCa--CGUUGc---UCaaGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 35756 0.66 0.819031
Target:  5'- cGGCGGGGaugGUGUAGCGcggacGGUuccauguuggcgUCGCCGu -3'
miRNA:   3'- -CCGCUCCg--CACGUUGC-----UCA------------AGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 60071 0.66 0.809849
Target:  5'- cGGCccGGCG-GCccguGCGGGccUUCACCGGg -3'
miRNA:   3'- -CCGcuCCGCaCGu---UGCUC--AAGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 49068 0.66 0.808921
Target:  5'- gGGCGGcaccGGCGUGCGGaacaGGGUgaugugcuccuucUUGCCGGu -3'
miRNA:   3'- -CCGCU----CCGCACGUUg---CUCA-------------AGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 65038 0.66 0.800488
Target:  5'- uGGCGgccacgaacucaGGGCG-GCAGucCGGGUagacggcguggUCACCGAc -3'
miRNA:   3'- -CCGC------------UCCGCaCGUU--GCUCA-----------AGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 5840 0.66 0.799542
Target:  5'- uGGCGguguucgaggaccAGGCGUGCGACuGGcagGCCGGg -3'
miRNA:   3'- -CCGC-------------UCCGCACGUUGcUCaagUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 30501 0.66 0.799542
Target:  5'- cGUGGGGCG-GCuGGCGcuggggucggugaAGUUCACCGc -3'
miRNA:   3'- cCGCUCCGCaCG-UUGC-------------UCAAGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 17899 0.66 0.790956
Target:  5'- -uCGAGGCcacccuGUGCAACGucaaCACCGAa -3'
miRNA:   3'- ccGCUCCG------CACGUUGCucaaGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 23111 0.66 0.790956
Target:  5'- cGGCGAcGcCGUGC-ACGAGUggugugcCGCCGu -3'
miRNA:   3'- -CCGCUcC-GCACGuUGCUCAa------GUGGCu -5'
19107 3' -54.8 NC_004684.1 + 5408 0.66 0.790956
Target:  5'- cGGCGGGuGCGggugGCucAugGuGUaCACCGAc -3'
miRNA:   3'- -CCGCUC-CGCa---CG--UugCuCAaGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 9028 0.66 0.789031
Target:  5'- uGCGGGGCGgcaaccggcgcgGCAACGccagcaGGgcCACCGGg -3'
miRNA:   3'- cCGCUCCGCa-----------CGUUGC------UCaaGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 54443 0.66 0.781266
Target:  5'- cGGCGggagcaccggGGGUGccgacgGCGGCGAaGUUgGCCGAc -3'
miRNA:   3'- -CCGC----------UCCGCa-----CGUUGCU-CAAgUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 12888 0.66 0.781266
Target:  5'- cGGUGAGcGCG-GU-ACGAGcUUACCGGc -3'
miRNA:   3'- -CCGCUC-CGCaCGuUGCUCaAGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 54965 0.66 0.781266
Target:  5'- cGCGcGGgGUG-AACGGGUggcCGCCGAc -3'
miRNA:   3'- cCGCuCCgCACgUUGCUCAa--GUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 29136 0.66 0.781266
Target:  5'- uGCGAgcuGGUgGUGcCGACGcAGUUCGCCGc -3'
miRNA:   3'- cCGCU---CCG-CAC-GUUGC-UCAAGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 29054 0.66 0.781266
Target:  5'- -cCGGGGUGUGCAGCugaaccAGUUCcugcccACCGAg -3'
miRNA:   3'- ccGCUCCGCACGUUGc-----UCAAG------UGGCU- -5'
19107 3' -54.8 NC_004684.1 + 24759 0.66 0.781266
Target:  5'- uGGCGGcaccagcaccGGCG-GCGGCGGGggaggUGCCGGg -3'
miRNA:   3'- -CCGCU----------CCGCaCGUUGCUCaa---GUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 41263 0.67 0.771426
Target:  5'- aGCGAGGUGcUGguGCG-GUcggacagCGCCGAg -3'
miRNA:   3'- cCGCUCCGC-ACguUGCuCAa------GUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 8486 0.67 0.771426
Target:  5'- gGGUGGGGCGggGaCGGCGAGacggUGCCGu -3'
miRNA:   3'- -CCGCUCCGCa-C-GUUGCUCaa--GUGGCu -5'
19107 3' -54.8 NC_004684.1 + 51595 0.67 0.771426
Target:  5'- cGGCGugguGGUGUGCAcguuGCcGGUgUCGCCGc -3'
miRNA:   3'- -CCGCu---CCGCACGU----UGcUCA-AGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.