miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19107 3' -54.8 NC_004684.1 + 2397 0.67 0.761447
Target:  5'- gGGUGcGGCGUGC-ACGucGUggCACCGu -3'
miRNA:   3'- -CCGCuCCGCACGuUGCu-CAa-GUGGCu -5'
19107 3' -54.8 NC_004684.1 + 34045 0.67 0.761447
Target:  5'- uGGCGAGGCcggacUGCAcCGAGgUgGCCa- -3'
miRNA:   3'- -CCGCUCCGc----ACGUuGCUCaAgUGGcu -5'
19107 3' -54.8 NC_004684.1 + 5785 0.67 0.761447
Target:  5'- uGCGuGGUGUGCGgGCGGGacgccucgacCACCGAg -3'
miRNA:   3'- cCGCuCCGCACGU-UGCUCaa--------GUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 21313 0.67 0.75134
Target:  5'- aGGCGAGGCGgugGUccGGCGcGacCGCCGc -3'
miRNA:   3'- -CCGCUCCGCa--CG--UUGCuCaaGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 20357 0.67 0.75134
Target:  5'- gGGUGGGGCG-GCuacuGCGAaggccagucGUUCcCCGAc -3'
miRNA:   3'- -CCGCUCCGCaCGu---UGCU---------CAAGuGGCU- -5'
19107 3' -54.8 NC_004684.1 + 61537 0.67 0.75134
Target:  5'- aGGCGcuGGCGUGCcGCuGGUUgGuCCGGg -3'
miRNA:   3'- -CCGCu-CCGCACGuUGcUCAAgU-GGCU- -5'
19107 3' -54.8 NC_004684.1 + 53917 0.67 0.741117
Target:  5'- gGGUcAGGCGaGguGCGGGgUCACCGu -3'
miRNA:   3'- -CCGcUCCGCaCguUGCUCaAGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 2076 0.67 0.741117
Target:  5'- uGGCGcuGGCcgugGUGCAcaGCGAGgcCGCCGu -3'
miRNA:   3'- -CCGCu-CCG----CACGU--UGCUCaaGUGGCu -5'
19107 3' -54.8 NC_004684.1 + 18135 0.67 0.730787
Target:  5'- uGCuGGGCG-GCAAgGAGUUCACg-- -3'
miRNA:   3'- cCGcUCCGCaCGUUgCUCAAGUGgcu -5'
19107 3' -54.8 NC_004684.1 + 25998 0.67 0.730787
Target:  5'- uGGCGcuccuGGCG-GCGGcCGGGUUCaacguGCCGGa -3'
miRNA:   3'- -CCGCu----CCGCaCGUU-GCUCAAG-----UGGCU- -5'
19107 3' -54.8 NC_004684.1 + 35010 0.67 0.729749
Target:  5'- gGGUGAcGCGUGCGGCGcgcgaauGGgUCACCa- -3'
miRNA:   3'- -CCGCUcCGCACGUUGC-------UCaAGUGGcu -5'
19107 3' -54.8 NC_004684.1 + 65200 0.68 0.716168
Target:  5'- cGGCGuaguGGcCGUGCGgcaccucgcgggccAugaccgucaacgcCGAGUUCACCGAc -3'
miRNA:   3'- -CCGCu---CC-GCACGU--------------U-------------GCUCAAGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 22621 0.68 0.709853
Target:  5'- uGGCGGGGCcc-CGACGG--UCGCCGGu -3'
miRNA:   3'- -CCGCUCCGcacGUUGCUcaAGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 32060 0.68 0.709853
Target:  5'- uGGCGAaugcGGUGUGCuugGGCGAGUUCuuguUCGc -3'
miRNA:   3'- -CCGCU----CCGCACG---UUGCUCAAGu---GGCu -5'
19107 3' -54.8 NC_004684.1 + 40939 0.68 0.709853
Target:  5'- cGGCcAGGCGUGCcGCc-GUaCACCGGg -3'
miRNA:   3'- -CCGcUCCGCACGuUGcuCAaGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 55644 0.68 0.706686
Target:  5'- cGGCu-GGCGUGCGugGAGgagggccuggcggcgCACCa- -3'
miRNA:   3'- -CCGcuCCGCACGUugCUCaa-------------GUGGcu -5'
19107 3' -54.8 NC_004684.1 + 46600 0.68 0.69927
Target:  5'- cGGCGAcGGCG-GCGguuugguacgaGCGcAGUUCGCgGGg -3'
miRNA:   3'- -CCGCU-CCGCaCGU-----------UGC-UCAAGUGgCU- -5'
19107 3' -54.8 NC_004684.1 + 16953 0.68 0.69927
Target:  5'- cGCGAGGCcUGCaAGCGGGccugCACCu- -3'
miRNA:   3'- cCGCUCCGcACG-UUGCUCaa--GUGGcu -5'
19107 3' -54.8 NC_004684.1 + 3829 0.68 0.69927
Target:  5'- gGGCGcguucGGCGUGCcgaccGACGAccaCACCGAa -3'
miRNA:   3'- -CCGCu----CCGCACG-----UUGCUcaaGUGGCU- -5'
19107 3' -54.8 NC_004684.1 + 23208 0.68 0.677927
Target:  5'- cGCGAGGUGcugGCGcgcgcCGGGUUCAUCGc -3'
miRNA:   3'- cCGCUCCGCa--CGUu----GCUCAAGUGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.