miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19107 5' -59.3 NC_004684.1 + 45749 0.66 0.592077
Target:  5'- aCGCCgagAGCGCCuGCUcgguUGGCaGGCGCa- -3'
miRNA:   3'- -GCGG---UCGCGGuCGAu---GCUG-CUGCGcg -5'
19107 5' -59.3 NC_004684.1 + 18616 0.66 0.592077
Target:  5'- gGCCAGCGacugggcgaCCAGCgguggACcucugcccgguGACGACGUGa -3'
miRNA:   3'- gCGGUCGC---------GGUCGa----UG-----------CUGCUGCGCg -5'
19107 5' -59.3 NC_004684.1 + 50564 0.66 0.592077
Target:  5'- gCGgCGGCGaCCcGCUuugaaccuggcGCGaAUGGCGCGCc -3'
miRNA:   3'- -GCgGUCGC-GGuCGA-----------UGC-UGCUGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 6227 0.66 0.592077
Target:  5'- gGCCAGCugggcgGCCAgGCcuuCGACGGugaugcagUGCGCg -3'
miRNA:   3'- gCGGUCG------CGGU-CGau-GCUGCU--------GCGCG- -5'
19107 5' -59.3 NC_004684.1 + 60532 0.66 0.592077
Target:  5'- aGCCAGUG-CAGCaccACcACGGCGuCGCc -3'
miRNA:   3'- gCGGUCGCgGUCGa--UGcUGCUGC-GCG- -5'
19107 5' -59.3 NC_004684.1 + 35349 0.66 0.592077
Target:  5'- uCGCCaaguggacgcGGUGCCAGCU--GugGGCGUucccGCa -3'
miRNA:   3'- -GCGG----------UCGCGGUCGAugCugCUGCG----CG- -5'
19107 5' -59.3 NC_004684.1 + 20474 0.66 0.592077
Target:  5'- cCGCCGuugGCCGGUccugggggaUGCGGCGGgGUGCu -3'
miRNA:   3'- -GCGGUcg-CGGUCG---------AUGCUGCUgCGCG- -5'
19107 5' -59.3 NC_004684.1 + 17117 0.66 0.592077
Target:  5'- gGCCuGGCGCUGGCcaGCGACGACc--- -3'
miRNA:   3'- gCGG-UCGCGGUCGa-UGCUGCUGcgcg -5'
19107 5' -59.3 NC_004684.1 + 45191 0.66 0.592077
Target:  5'- gGCCAccuGCGCCAGUccgaaGGCGGuCGcCGCc -3'
miRNA:   3'- gCGGU---CGCGGUCGaug--CUGCU-GC-GCG- -5'
19107 5' -59.3 NC_004684.1 + 49767 0.66 0.592077
Target:  5'- gCGCUgAGCGCCAG-UACGGguucCGAgGcCGCa -3'
miRNA:   3'- -GCGG-UCGCGGUCgAUGCU----GCUgC-GCG- -5'
19107 5' -59.3 NC_004684.1 + 47143 0.66 0.592077
Target:  5'- gCGCCGG-GCCGGaaguaGuacCGGCGCGCc -3'
miRNA:   3'- -GCGGUCgCGGUCgaug-Cu--GCUGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 58153 0.66 0.591032
Target:  5'- cCGCCAGCGUCGGCagcagguuCGGguccuggcccaccCGgucACGCGCc -3'
miRNA:   3'- -GCGGUCGCGGUCGau------GCU-------------GC---UGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 13266 0.66 0.585809
Target:  5'- cCGCCAGCGC--GCUG-GugGccgccgguggcugguGCGCGCc -3'
miRNA:   3'- -GCGGUCGCGguCGAUgCugC---------------UGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 44880 0.66 0.585809
Target:  5'- uGCCuGCGUCAGCUGCuGAauggcaccgagcgguUGGC-CGCu -3'
miRNA:   3'- gCGGuCGCGGUCGAUG-CU---------------GCUGcGCG- -5'
19107 5' -59.3 NC_004684.1 + 24581 0.66 0.582679
Target:  5'- uGCCgGGCGagcacguccugacgaCAGCg--GACGugGCGCg -3'
miRNA:   3'- gCGG-UCGCg--------------GUCGaugCUGCugCGCG- -5'
19107 5' -59.3 NC_004684.1 + 2934 0.66 0.581637
Target:  5'- uGCCuccGGUGCCgAGCacCGAggccauCGGCGCGCu -3'
miRNA:   3'- gCGG---UCGCGG-UCGauGCU------GCUGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 8502 0.66 0.581637
Target:  5'- gCGagaCGGUGCCGuGCUGgGAuugUGGCGUGCu -3'
miRNA:   3'- -GCg--GUCGCGGU-CGAUgCU---GCUGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 56771 0.66 0.581637
Target:  5'- gGCCAGCacGCCcauacGGCaACGGCaGuuGCGCa -3'
miRNA:   3'- gCGGUCG--CGG-----UCGaUGCUG-CugCGCG- -5'
19107 5' -59.3 NC_004684.1 + 19776 0.66 0.581637
Target:  5'- gGCCGaCGCCgAGUaccgACGGCGGUGUGCg -3'
miRNA:   3'- gCGGUcGCGG-UCGa---UGCUGCUGCGCG- -5'
19107 5' -59.3 NC_004684.1 + 31208 0.66 0.581637
Target:  5'- gGCUgaGGUGCCAGCgcguCGccaACGAC-CGCg -3'
miRNA:   3'- gCGG--UCGCGGUCGau--GC---UGCUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.