miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 3' -62.2 NC_004684.1 + 33713 0.66 0.44765
Target:  5'- uGUC-CaGCGCGGUGGUgGugCacaGCGACg -3'
miRNA:   3'- -CGGaGcCGCGCCACCGgCugG---CGUUG- -5'
19108 3' -62.2 NC_004684.1 + 64833 0.66 0.44765
Target:  5'- gGCCUCGGCGaa--GGCCu-CCGCGc- -3'
miRNA:   3'- -CGGAGCCGCgccaCCGGcuGGCGUug -5'
19108 3' -62.2 NC_004684.1 + 42106 0.66 0.44765
Target:  5'- cGCCU-GGUGUGGccggaaGGCCcuugGugCGCAGCu -3'
miRNA:   3'- -CGGAgCCGCGCCa-----CCGG----CugGCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 57514 0.66 0.44765
Target:  5'- gGCCUgcuccugcgCGGCGuCGGgauCCGGCgGCAGCu -3'
miRNA:   3'- -CGGA---------GCCGC-GCCaccGGCUGgCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 6839 0.66 0.44765
Target:  5'- gGCCUaCGGCGCGaaGGgCGacGCCGUggUg -3'
miRNA:   3'- -CGGA-GCCGCGCcaCCgGC--UGGCGuuG- -5'
19108 3' -62.2 NC_004684.1 + 42848 0.66 0.44765
Target:  5'- cGCauaCGaGCGCGGUggGGCCaaccaGGCCGCcGCa -3'
miRNA:   3'- -CGga-GC-CGCGCCA--CCGG-----CUGGCGuUG- -5'
19108 3' -62.2 NC_004684.1 + 43793 0.66 0.44765
Target:  5'- -gCUUGGCGUucuuacgguGGUGGCgCG-CgCGCAGCg -3'
miRNA:   3'- cgGAGCCGCG---------CCACCG-GCuG-GCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 53830 0.66 0.44765
Target:  5'- cGCCUCGaCGCaGUaGCCGAUggccgccaggCGCAGCu -3'
miRNA:   3'- -CGGAGCcGCGcCAcCGGCUG----------GCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 8958 0.66 0.44765
Target:  5'- gGUC-CGGCaCGG-GGCCGGagGCAACg -3'
miRNA:   3'- -CGGaGCCGcGCCaCCGGCUggCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 21310 0.66 0.44765
Target:  5'- cGCa--GGCgagGCGGUGGUccggcgCGACCGCcGCa -3'
miRNA:   3'- -CGgagCCG---CGCCACCG------GCUGGCGuUG- -5'
19108 3' -62.2 NC_004684.1 + 42201 0.66 0.44765
Target:  5'- gGCCgUGGaGCuGGUGGCCGA-CGUGGCc -3'
miRNA:   3'- -CGGaGCCgCG-CCACCGGCUgGCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 15597 0.66 0.446728
Target:  5'- cGCgCUCGGUGCgcuaccgGGUGcCCGAagGCAACg -3'
miRNA:   3'- -CG-GAGCCGCG-------CCACcGGCUggCGUUG- -5'
19108 3' -62.2 NC_004684.1 + 50369 0.66 0.446728
Target:  5'- aCCgggCGGCGUGGUGcuuauucucGUCGGCCauauaaaggcccaGCAACg -3'
miRNA:   3'- cGGa--GCCGCGCCAC---------CGGCUGG-------------CGUUG- -5'
19108 3' -62.2 NC_004684.1 + 11155 0.66 0.44397
Target:  5'- cGCCgUCGGUggaccuggccgccaGCGaGUGGgucaugaCCGACCGgGACg -3'
miRNA:   3'- -CGG-AGCCG--------------CGC-CACC-------GGCUGGCgUUG- -5'
19108 3' -62.2 NC_004684.1 + 27703 0.66 0.438482
Target:  5'- -aCUCGGUcaucuCGGcGGCCGAgCGCGAg -3'
miRNA:   3'- cgGAGCCGc----GCCaCCGGCUgGCGUUg -5'
19108 3' -62.2 NC_004684.1 + 20210 0.66 0.438482
Target:  5'- cGCCgcgCaGCgGCGGcccUGGCCG-CCGCuACg -3'
miRNA:   3'- -CGGa--GcCG-CGCC---ACCGGCuGGCGuUG- -5'
19108 3' -62.2 NC_004684.1 + 40019 0.66 0.438482
Target:  5'- cGCUcCGGCGCgauGGUGGCCuugggcaucauGCCGguGCc -3'
miRNA:   3'- -CGGaGCCGCG---CCACCGGc----------UGGCguUG- -5'
19108 3' -62.2 NC_004684.1 + 40994 0.66 0.438482
Target:  5'- cGCCgguggCGGCGU--UGGCCaGAUCGCcGCc -3'
miRNA:   3'- -CGGa----GCCGCGccACCGG-CUGGCGuUG- -5'
19108 3' -62.2 NC_004684.1 + 56806 0.66 0.438482
Target:  5'- uGCCgUCGGUGaCGGacgUGGCCaucGACCaCGACc -3'
miRNA:   3'- -CGG-AGCCGC-GCC---ACCGG---CUGGcGUUG- -5'
19108 3' -62.2 NC_004684.1 + 1029 0.66 0.438482
Target:  5'- aGCUcgCGGCGUGG-GGCCaGAaaUgGCGGCa -3'
miRNA:   3'- -CGGa-GCCGCGCCaCCGG-CU--GgCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.