miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 30058 0.66 0.755219
Target:  5'- uCGGUUgCGGCgggcuuuccagguaGGCAAuGGCCAuGCUGg -3'
miRNA:   3'- -GCUAAgGCCGg-------------CUGUU-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 43421 0.66 0.751144
Target:  5'- cCGAacCCgaGGcCCGGCGAGGCCGAGg-- -3'
miRNA:   3'- -GCUaaGG--CC-GGCUGUUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 20316 0.66 0.751144
Target:  5'- -cGUUCUGGUgcccUGGCAauGGGCCGGGCa- -3'
miRNA:   3'- gcUAAGGCCG----GCUGU--UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 23775 0.66 0.751144
Target:  5'- ----cUCGGCC-ACAccguGGCCGGGCUGu -3'
miRNA:   3'- gcuaaGGCCGGcUGUu---CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 12122 0.66 0.740875
Target:  5'- cCGAccCCGGCUGAgGAGaucaGCCGAcuGCUGg -3'
miRNA:   3'- -GCUaaGGCCGGCUgUUC----CGGUU--CGAC- -5'
19108 5' -55.8 NC_004684.1 + 36482 0.66 0.740875
Target:  5'- gCGGcaCCGGguucgacaUCGGCAAGGCCGGgacGCUGa -3'
miRNA:   3'- -GCUaaGGCC--------GGCUGUUCCGGUU---CGAC- -5'
19108 5' -55.8 NC_004684.1 + 41579 0.66 0.740874
Target:  5'- -cGUUCUGGCCGcCAcccGGCCA-GUUGg -3'
miRNA:   3'- gcUAAGGCCGGCuGUu--CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 15414 0.66 0.740874
Target:  5'- gCGA---UGGCCGACAccguGGCCAcccuGCUGc -3'
miRNA:   3'- -GCUaagGCCGGCUGUu---CCGGUu---CGAC- -5'
19108 5' -55.8 NC_004684.1 + 63683 0.66 0.740874
Target:  5'- uGAUaCCGGCCaGCGcGGCgGcGCUGg -3'
miRNA:   3'- gCUAaGGCCGGcUGUuCCGgUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 61432 0.66 0.739842
Target:  5'- ----gCCGGucgcucaCCGGCGcGGCCAGGUUGg -3'
miRNA:   3'- gcuaaGGCC-------GGCUGUuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 5968 0.66 0.730499
Target:  5'- cCGGUgagcgaCCGGCCGAgCAAgucccGGCCuGGCUc -3'
miRNA:   3'- -GCUAa-----GGCCGGCU-GUU-----CCGGuUCGAc -5'
19108 5' -55.8 NC_004684.1 + 16527 0.66 0.720026
Target:  5'- cCGAUg-UGGCCGcCGAGGUUGAGCa- -3'
miRNA:   3'- -GCUAagGCCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 19682 0.66 0.70947
Target:  5'- ----aCCGGCgcggCGGCAAGGCCuGGCc- -3'
miRNA:   3'- gcuaaGGCCG----GCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 23833 0.66 0.70947
Target:  5'- gGAg--CGGCUgGACAAGGCCAAGg-- -3'
miRNA:   3'- gCUaagGCCGG-CUGUUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 63914 0.66 0.709469
Target:  5'- aCGGUg-CGGcCCGGCGuGGCUGAGCUu -3'
miRNA:   3'- -GCUAagGCC-GGCUGUuCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 15501 0.66 0.70841
Target:  5'- -aGUUCCuggacaaGGCCGccCGGGGCCGGGCg- -3'
miRNA:   3'- gcUAAGG-------CCGGCu-GUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 4359 0.67 0.698839
Target:  5'- aGGUcUCCGa-CGACuucucgaccccgGAGGCCGAGCUGg -3'
miRNA:   3'- gCUA-AGGCcgGCUG------------UUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 52317 0.67 0.698839
Target:  5'- ----aCCGcGCCGAUAAGGCCGucgaccucauccGGCg- -3'
miRNA:   3'- gcuaaGGC-CGGCUGUUCCGGU------------UCGac -5'
19108 5' -55.8 NC_004684.1 + 48129 0.67 0.698839
Target:  5'- cCGGcUCCGG-CGGCAGGGCaucgAAGCa- -3'
miRNA:   3'- -GCUaAGGCCgGCUGUUCCGg---UUCGac -5'
19108 5' -55.8 NC_004684.1 + 16037 0.67 0.688146
Target:  5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3'
miRNA:   3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.