miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 10892 0.67 0.688145
Target:  5'- cCGGUgaccacCCGGgUCGGCGcguacAGGCCGAGCa- -3'
miRNA:   3'- -GCUAa-----GGCC-GGCUGU-----UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 41646 0.67 0.666613
Target:  5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3'
miRNA:   3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 16037 0.67 0.688146
Target:  5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3'
miRNA:   3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 62886 0.67 0.687073
Target:  5'- gGAUcCCGGCCaugccguugccacGGC-GGGCCAGGCc- -3'
miRNA:   3'- gCUAaGGCCGG-------------CUGuUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 12003 0.67 0.688145
Target:  5'- gCGAagguUUCCGGCgCGAUccGGGCCA-GCUu -3'
miRNA:   3'- -GCU----AAGGCCG-GCUGu-UCCGGUuCGAc -5'
19108 5' -55.8 NC_004684.1 + 38304 0.67 0.6774
Target:  5'- uGGUcaaCgGGUCGAucacCGAGGCCAAGCUc -3'
miRNA:   3'- gCUAa--GgCCGGCU----GUUCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 52317 0.67 0.698839
Target:  5'- ----aCCGcGCCGAUAAGGCCGucgaccucauccGGCg- -3'
miRNA:   3'- gcuaaGGC-CGGCUGUUCCGGU------------UCGac -5'
19108 5' -55.8 NC_004684.1 + 6619 0.67 0.666613
Target:  5'- cCGGaaCCGGCCuGGcCAGGGCCGuGCUc -3'
miRNA:   3'- -GCUaaGGCCGG-CU-GUUCCGGUuCGAc -5'
19108 5' -55.8 NC_004684.1 + 25950 0.67 0.655793
Target:  5'- aGGUgCCcaacGCCGAgcuGGCCAAGCUGg -3'
miRNA:   3'- gCUAaGGc---CGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 63468 0.67 0.644953
Target:  5'- -aGUUCCGGCauucgggggcGCGAGGCCuccAGCUGc -3'
miRNA:   3'- gcUAAGGCCGgc--------UGUUCCGGu--UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 48129 0.67 0.698839
Target:  5'- cCGGcUCCGG-CGGCAGGGCaucgAAGCa- -3'
miRNA:   3'- -GCUaAGGCCgGCUGUUCCGg---UUCGac -5'
19108 5' -55.8 NC_004684.1 + 65347 0.67 0.6774
Target:  5'- aCGAUggCGGCCccCAGGGCCAccagGGCg- -3'
miRNA:   3'- -GCUAagGCCGGcuGUUCCGGU----UCGac -5'
19108 5' -55.8 NC_004684.1 + 17344 0.68 0.612402
Target:  5'- cCGGUUCCuGGCCuggagccaGGCAccGGCCAcGCUGc -3'
miRNA:   3'- -GCUAAGG-CCGG--------CUGUu-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 26728 0.68 0.634101
Target:  5'- ----gCUGGCCGagcgcgacugGCGGGGCCAGGCc- -3'
miRNA:   3'- gcuaaGGCCGGC----------UGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 51654 0.68 0.58
Target:  5'- ----gCUGGCCGugcACGAGGCCcuuGCUGg -3'
miRNA:   3'- gcuaaGGCCGGC---UGUUCCGGuu-CGAC- -5'
19108 5' -55.8 NC_004684.1 + 13857 0.68 0.634102
Target:  5'- aGGUcaUCCGcGCCGACcuGGCCAuucAGgaGg -3'
miRNA:   3'- gCUA--AGGC-CGGCUGuuCCGGU---UCgaC- -5'
19108 5' -55.8 NC_004684.1 + 16454 0.68 0.612402
Target:  5'- ---aUCgUGcGCCugGACGAGGCCGGGCUGu -3'
miRNA:   3'- gcuaAG-GC-CGG--CUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 10496 0.68 0.634102
Target:  5'- ----cCCGGCCGACGcacuGGGCCGccgacggucAGCg- -3'
miRNA:   3'- gcuaaGGCCGGCUGU----UCCGGU---------UCGac -5'
19108 5' -55.8 NC_004684.1 + 23103 0.68 0.612402
Target:  5'- cCGAgcagUCCGG-CGAUcuGGCCAAGUg- -3'
miRNA:   3'- -GCUa---AGGCCgGCUGuuCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 23031 0.68 0.611319
Target:  5'- gCGAuUUCCuGCCacgccuuggugacGGCcuGGCCAAGCUGg -3'
miRNA:   3'- -GCU-AAGGcCGG-------------CUGuuCCGGUUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.