miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 4828 1.09 0.001102
Target:  5'- uCGAUUCCGGCCGACAAGGCCAAGCUGg -3'
miRNA:   3'- -GCUAAGGCCGGCUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 5588 0.85 0.059137
Target:  5'- gCGAcccgCCuGCCGACGGGGCCGAGCUGg -3'
miRNA:   3'- -GCUaa--GGcCGGCUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 3839 0.78 0.175228
Target:  5'- uGAUggcagCGGCCGAgGAGGCCGAGCg- -3'
miRNA:   3'- gCUAag---GCCGGCUgUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 11092 0.77 0.189803
Target:  5'- aCGuc-CCGGCgCGcCAGGGCCGGGCUGa -3'
miRNA:   3'- -GCuaaGGCCG-GCuGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 64729 0.76 0.215899
Target:  5'- uCGggUCCaucuuguGGCCGACcugcuGGCCGAGCUGg -3'
miRNA:   3'- -GCuaAGG-------CCGGCUGuu---CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 12679 0.76 0.216462
Target:  5'- uGGUggaGGCCGACGAGGCCAuuuccGCUGc -3'
miRNA:   3'- gCUAaggCCGGCUGUUCCGGUu----CGAC- -5'
19108 5' -55.8 NC_004684.1 + 32649 0.75 0.26573
Target:  5'- aGAUcgugCCGGuuGGCAAGGCCuGGCg- -3'
miRNA:   3'- gCUAa---GGCCggCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 55417 0.74 0.279387
Target:  5'- uCGGUgccgCCGGUCGcggugugcgccGCAGGuGCCAGGCUGg -3'
miRNA:   3'- -GCUAa---GGCCGGC-----------UGUUC-CGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 21859 0.74 0.300173
Target:  5'- cCGGUgcgCCGGUCGaagagguggaugaGCAGGGCCAGGCc- -3'
miRNA:   3'- -GCUAa--GGCCGGC-------------UGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 55637 0.73 0.323693
Target:  5'- gCGAUUUCGGCUGGCGugcguggaggaGGGCCuGGCg- -3'
miRNA:   3'- -GCUAAGGCCGGCUGU-----------UCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 36383 0.72 0.364459
Target:  5'- ----aCCGGUCGGCGucAGGCCcAGCUGc -3'
miRNA:   3'- gcuaaGGCCGGCUGU--UCCGGuUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 8987 0.72 0.381731
Target:  5'- gGGUUCCGG-CGGCcGGGCCAAGg-- -3'
miRNA:   3'- gCUAAGGCCgGCUGuUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 16161 0.72 0.381731
Target:  5'- uCGA--CCGGCCGAU--GGCCAAGgUGa -3'
miRNA:   3'- -GCUaaGGCCGGCUGuuCCGGUUCgAC- -5'
19108 5' -55.8 NC_004684.1 + 9906 0.71 0.443412
Target:  5'- aCGAguggUCCgGGCUGACcgaggcggugauuguGGCCGGGCUGa -3'
miRNA:   3'- -GCUa---AGG-CCGGCUGuu-------------CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 478 0.71 0.456019
Target:  5'- aGGUUgUGGCCGcCAAGGCCGcGCc- -3'
miRNA:   3'- gCUAAgGCCGGCuGUUCCGGUuCGac -5'
19108 5' -55.8 NC_004684.1 + 57886 0.71 0.417872
Target:  5'- cCGGUgCUGGCUGGu--GGCCGGGCUGa -3'
miRNA:   3'- -GCUAaGGCCGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 16352 0.71 0.446304
Target:  5'- uGGcgCUGGCCGACAAgcuggcGGCCGAGUa- -3'
miRNA:   3'- gCUaaGGCCGGCUGUU------CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 45469 0.71 0.436705
Target:  5'- uGAUgcucCCGGCgGugGucaccGGGCCAGGCUa -3'
miRNA:   3'- gCUAa---GGCCGgCugU-----UCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 48079 0.7 0.5062
Target:  5'- cCGGUUCCGGCguCGGCcGGG-CAAGCa- -3'
miRNA:   3'- -GCUAAGGCCG--GCUGuUCCgGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 22819 0.7 0.495964
Target:  5'- uCGA--CCGGCaguuccCGGCGgugcAGGCCGGGCUGg -3'
miRNA:   3'- -GCUaaGGCCG------GCUGU----UCCGGUUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.