Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 19138 | 0.7 | 0.485824 |
Target: 5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3' miRNA: 3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 22819 | 0.7 | 0.495964 |
Target: 5'- uCGA--CCGGCaguuccCGGCGgugcAGGCCGGGCUGg -3' miRNA: 3'- -GCUaaGGCCG------GCUGU----UCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 18462 | 0.7 | 0.495964 |
Target: 5'- ---gUUCGG-CGACGAGGCCGGGCc- -3' miRNA: 3'- gcuaAGGCCgGCUGUUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 32225 | 0.7 | 0.506199 |
Target: 5'- cCGGUUCCGGCuCGGCca--CCGAGUUGg -3' miRNA: 3'- -GCUAAGGCCG-GCUGuuccGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 3355 | 0.7 | 0.506199 |
Target: 5'- uCGAggCCGacaccGCCGACAccgAGGUCAAGCg- -3' miRNA: 3'- -GCUaaGGC-----CGGCUGU---UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 48079 | 0.7 | 0.5062 |
Target: 5'- cCGGUUCCGGCguCGGCcGGG-CAAGCa- -3' miRNA: 3'- -GCUAAGGCCG--GCUGuUCCgGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 301 | 0.7 | 0.516523 |
Target: 5'- aGAguucgCUGGCCGcCGAGGCCAAcGCc- -3' miRNA: 3'- gCUaa---GGCCGGCuGUUCCGGUU-CGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 41085 | 0.69 | 0.526931 |
Target: 5'- ----cCCGG-CGGCcuGGCCGAGCUGc -3' miRNA: 3'- gcuaaGGCCgGCUGuuCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 24392 | 0.69 | 0.526932 |
Target: 5'- aGAUUCaggugaaGGCCGACAccaagaAGGcCCAGGCc- -3' miRNA: 3'- gCUAAGg------CCGGCUGU------UCC-GGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 8437 | 0.69 | 0.537417 |
Target: 5'- ----cUCGGCgGACAGGGCCcGGCg- -3' miRNA: 3'- gcuaaGGCCGgCUGUUCCGGuUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 1421 | 0.69 | 0.537417 |
Target: 5'- gGAggCCuGCCGGgcCAagguccAGGCCGAGCUGg -3' miRNA: 3'- gCUaaGGcCGGCU--GU------UCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 44547 | 0.69 | 0.537417 |
Target: 5'- aCGAacCCGGUCGGCAggccggugaucGGGUCAGGCa- -3' miRNA: 3'- -GCUaaGGCCGGCUGU-----------UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 7959 | 0.69 | 0.547973 |
Target: 5'- ----aCCGGUgGGCAAGGCCGccaGGCg- -3' miRNA: 3'- gcuaaGGCCGgCUGUUCCGGU---UCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 43951 | 0.69 | 0.558594 |
Target: 5'- aGG-UCUcGCCGuCGAGGCCGAGCa- -3' miRNA: 3'- gCUaAGGcCGGCuGUUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 10091 | 0.69 | 0.573557 |
Target: 5'- cCGGgcagggCUGGCCGGggugcggcucgccguCAcAGGCCGAGCUGu -3' miRNA: 3'- -GCUaa----GGCCGGCU---------------GU-UCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 51654 | 0.68 | 0.58 |
Target: 5'- ----gCUGGCCGugcACGAGGCCcuuGCUGg -3' miRNA: 3'- gcuaaGGCCGGC---UGUUCCGGuu-CGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23031 | 0.68 | 0.611319 |
Target: 5'- gCGAuUUCCuGCCacgccuuggugacGGCcuGGCCAAGCUGg -3' miRNA: 3'- -GCU-AAGGcCGG-------------CUGuuCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23103 | 0.68 | 0.612402 |
Target: 5'- cCGAgcagUCCGG-CGAUcuGGCCAAGUg- -3' miRNA: 3'- -GCUa---AGGCCgGCUGuuCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 16454 | 0.68 | 0.612402 |
Target: 5'- ---aUCgUGcGCCugGACGAGGCCGGGCUGu -3' miRNA: 3'- gcuaAG-GC-CGG--CUGUUCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 17344 | 0.68 | 0.612402 |
Target: 5'- cCGGUUCCuGGCCuggagccaGGCAccGGCCAcGCUGc -3' miRNA: 3'- -GCUAAGG-CCGG--------CUGUu-CCGGUuCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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