Results 41 - 60 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 26728 | 0.68 | 0.634101 |
Target: 5'- ----gCUGGCCGagcgcgacugGCGGGGCCAGGCc- -3' miRNA: 3'- gcuaaGGCCGGC----------UGUUCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 13857 | 0.68 | 0.634102 |
Target: 5'- aGGUcaUCCGcGCCGACcuGGCCAuucAGgaGg -3' miRNA: 3'- gCUA--AGGC-CGGCUGuuCCGGU---UCgaC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 10496 | 0.68 | 0.634102 |
Target: 5'- ----cCCGGCCGACGcacuGGGCCGccgacggucAGCg- -3' miRNA: 3'- gcuaaGGCCGGCUGU----UCCGGU---------UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 63468 | 0.67 | 0.644953 |
Target: 5'- -aGUUCCGGCauucgggggcGCGAGGCCuccAGCUGc -3' miRNA: 3'- gcUAAGGCCGgc--------UGUUCCGGu--UCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 25950 | 0.67 | 0.655793 |
Target: 5'- aGGUgCCcaacGCCGAgcuGGCCAAGCUGg -3' miRNA: 3'- gCUAaGGc---CGGCUguuCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 41646 | 0.67 | 0.666613 |
Target: 5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3' miRNA: 3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 6619 | 0.67 | 0.666613 |
Target: 5'- cCGGaaCCGGCCuGGcCAGGGCCGuGCUc -3' miRNA: 3'- -GCUaaGGCCGG-CU-GUUCCGGUuCGAc -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 8955 | 0.67 | 0.6774 |
Target: 5'- uCGggUCCGGC--ACGGGGCCGgaGGCa- -3' miRNA: 3'- -GCuaAGGCCGgcUGUUCCGGU--UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 44950 | 0.67 | 0.6774 |
Target: 5'- gGAUcgccgCCGcGCCGACGgcgauggcguugAGGCCcagcGGGCUGg -3' miRNA: 3'- gCUAa----GGC-CGGCUGU------------UCCGG----UUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 38304 | 0.67 | 0.6774 |
Target: 5'- uGGUcaaCgGGUCGAucacCGAGGCCAAGCUc -3' miRNA: 3'- gCUAa--GgCCGGCU----GUUCCGGUUCGAc -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 65347 | 0.67 | 0.6774 |
Target: 5'- aCGAUggCGGCCccCAGGGCCAccagGGCg- -3' miRNA: 3'- -GCUAagGCCGGcuGUUCCGGU----UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 62886 | 0.67 | 0.687073 |
Target: 5'- gGAUcCCGGCCaugccguugccacGGC-GGGCCAGGCc- -3' miRNA: 3'- gCUAaGGCCGG-------------CUGuUCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 10892 | 0.67 | 0.688145 |
Target: 5'- cCGGUgaccacCCGGgUCGGCGcguacAGGCCGAGCa- -3' miRNA: 3'- -GCUAa-----GGCC-GGCUGU-----UCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 43720 | 0.67 | 0.688145 |
Target: 5'- ---gUCCGGgCCGACcAGGCCGucGGUg- -3' miRNA: 3'- gcuaAGGCC-GGCUGuUCCGGU--UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 12003 | 0.67 | 0.688145 |
Target: 5'- gCGAagguUUCCGGCgCGAUccGGGCCA-GCUu -3' miRNA: 3'- -GCU----AAGGCCG-GCUGu-UCCGGUuCGAc -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 16037 | 0.67 | 0.688146 |
Target: 5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3' miRNA: 3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 48129 | 0.67 | 0.698839 |
Target: 5'- cCGGcUCCGG-CGGCAGGGCaucgAAGCa- -3' miRNA: 3'- -GCUaAGGCCgGCUGUUCCGg---UUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 4359 | 0.67 | 0.698839 |
Target: 5'- aGGUcUCCGa-CGACuucucgaccccgGAGGCCGAGCUGg -3' miRNA: 3'- gCUA-AGGCcgGCUG------------UUCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 52317 | 0.67 | 0.698839 |
Target: 5'- ----aCCGcGCCGAUAAGGCCGucgaccucauccGGCg- -3' miRNA: 3'- gcuaaGGC-CGGCUGUUCCGGU------------UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 15501 | 0.66 | 0.70841 |
Target: 5'- -aGUUCCuggacaaGGCCGccCGGGGCCGGGCg- -3' miRNA: 3'- gcUAAGG-------CCGGCu-GUUCCGGUUCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home