miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 10091 0.69 0.573557
Target:  5'- cCGGgcagggCUGGCCGGggugcggcucgccguCAcAGGCCGAGCUGu -3'
miRNA:   3'- -GCUaa----GGCCGGCU---------------GU-UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 43951 0.69 0.558594
Target:  5'- aGG-UCUcGCCGuCGAGGCCGAGCa- -3'
miRNA:   3'- gCUaAGGcCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 7959 0.69 0.547973
Target:  5'- ----aCCGGUgGGCAAGGCCGccaGGCg- -3'
miRNA:   3'- gcuaaGGCCGgCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 44547 0.69 0.537417
Target:  5'- aCGAacCCGGUCGGCAggccggugaucGGGUCAGGCa- -3'
miRNA:   3'- -GCUaaGGCCGGCUGU-----------UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 8437 0.69 0.537417
Target:  5'- ----cUCGGCgGACAGGGCCcGGCg- -3'
miRNA:   3'- gcuaaGGCCGgCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 1421 0.69 0.537417
Target:  5'- gGAggCCuGCCGGgcCAagguccAGGCCGAGCUGg -3'
miRNA:   3'- gCUaaGGcCGGCU--GU------UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 24392 0.69 0.526932
Target:  5'- aGAUUCaggugaaGGCCGACAccaagaAGGcCCAGGCc- -3'
miRNA:   3'- gCUAAGg------CCGGCUGU------UCC-GGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 41085 0.69 0.526931
Target:  5'- ----cCCGG-CGGCcuGGCCGAGCUGc -3'
miRNA:   3'- gcuaaGGCCgGCUGuuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 301 0.7 0.516523
Target:  5'- aGAguucgCUGGCCGcCGAGGCCAAcGCc- -3'
miRNA:   3'- gCUaa---GGCCGGCuGUUCCGGUU-CGac -5'
19108 5' -55.8 NC_004684.1 + 48079 0.7 0.5062
Target:  5'- cCGGUUCCGGCguCGGCcGGG-CAAGCa- -3'
miRNA:   3'- -GCUAAGGCCG--GCUGuUCCgGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 32225 0.7 0.506199
Target:  5'- cCGGUUCCGGCuCGGCca--CCGAGUUGg -3'
miRNA:   3'- -GCUAAGGCCG-GCUGuuccGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 3355 0.7 0.506199
Target:  5'- uCGAggCCGacaccGCCGACAccgAGGUCAAGCg- -3'
miRNA:   3'- -GCUaaGGC-----CGGCUGU---UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 22819 0.7 0.495964
Target:  5'- uCGA--CCGGCaguuccCGGCGgugcAGGCCGGGCUGg -3'
miRNA:   3'- -GCUaaGGCCG------GCUGU----UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 18462 0.7 0.495964
Target:  5'- ---gUUCGG-CGACGAGGCCGGGCc- -3'
miRNA:   3'- gcuaAGGCCgGCUGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 19138 0.7 0.485824
Target:  5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3'
miRNA:   3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 6204 0.7 0.485824
Target:  5'- uCGAUggccUCCGGCgCGAUcucGGCC-AGCUGg -3'
miRNA:   3'- -GCUA----AGGCCG-GCUGuu-CCGGuUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 18088 0.7 0.465846
Target:  5'- uCGAUcCUGGaCGGCAAGGCCAccgAGCg- -3'
miRNA:   3'- -GCUAaGGCCgGCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 478 0.71 0.456019
Target:  5'- aGGUUgUGGCCGcCAAGGCCGcGCc- -3'
miRNA:   3'- gCUAAgGCCGGCuGUUCCGGUuCGac -5'
19108 5' -55.8 NC_004684.1 + 16352 0.71 0.446304
Target:  5'- uGGcgCUGGCCGACAAgcuggcGGCCGAGUa- -3'
miRNA:   3'- gCUaaGGCCGGCUGUU------CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 9906 0.71 0.443412
Target:  5'- aCGAguggUCCgGGCUGACcgaggcggugauuguGGCCGGGCUGa -3'
miRNA:   3'- -GCUa---AGG-CCGGCUGuu-------------CCGGUUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.