miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 23103 0.68 0.612402
Target:  5'- cCGAgcagUCCGG-CGAUcuGGCCAAGUg- -3'
miRNA:   3'- -GCUa---AGGCCgGCUGuuCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 23775 0.66 0.751144
Target:  5'- ----cUCGGCC-ACAccguGGCCGGGCUGu -3'
miRNA:   3'- gcuaaGGCCGGcUGUu---CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 23833 0.66 0.70947
Target:  5'- gGAg--CGGCUgGACAAGGCCAAGg-- -3'
miRNA:   3'- gCUaagGCCGG-CUGUUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 24392 0.69 0.526932
Target:  5'- aGAUUCaggugaaGGCCGACAccaagaAGGcCCAGGCc- -3'
miRNA:   3'- gCUAAGg------CCGGCUGU------UCC-GGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 25950 0.67 0.655793
Target:  5'- aGGUgCCcaacGCCGAgcuGGCCAAGCUGg -3'
miRNA:   3'- gCUAaGGc---CGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 26728 0.68 0.634101
Target:  5'- ----gCUGGCCGagcgcgacugGCGGGGCCAGGCc- -3'
miRNA:   3'- gcuaaGGCCGGC----------UGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 30058 0.66 0.755219
Target:  5'- uCGGUUgCGGCgggcuuuccagguaGGCAAuGGCCAuGCUGg -3'
miRNA:   3'- -GCUAAgGCCGg-------------CUGUU-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 32225 0.7 0.506199
Target:  5'- cCGGUUCCGGCuCGGCca--CCGAGUUGg -3'
miRNA:   3'- -GCUAAGGCCG-GCUGuuccGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 32649 0.75 0.26573
Target:  5'- aGAUcgugCCGGuuGGCAAGGCCuGGCg- -3'
miRNA:   3'- gCUAa---GGCCggCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 36383 0.72 0.364459
Target:  5'- ----aCCGGUCGGCGucAGGCCcAGCUGc -3'
miRNA:   3'- gcuaaGGCCGGCUGU--UCCGGuUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 36482 0.66 0.740875
Target:  5'- gCGGcaCCGGguucgacaUCGGCAAGGCCGGgacGCUGa -3'
miRNA:   3'- -GCUaaGGCC--------GGCUGUUCCGGUU---CGAC- -5'
19108 5' -55.8 NC_004684.1 + 38304 0.67 0.6774
Target:  5'- uGGUcaaCgGGUCGAucacCGAGGCCAAGCUc -3'
miRNA:   3'- gCUAa--GgCCGGCU----GUUCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 41085 0.69 0.526931
Target:  5'- ----cCCGG-CGGCcuGGCCGAGCUGc -3'
miRNA:   3'- gcuaaGGCCgGCUGuuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 41579 0.66 0.740874
Target:  5'- -cGUUCUGGCCGcCAcccGGCCA-GUUGg -3'
miRNA:   3'- gcUAAGGCCGGCuGUu--CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 41646 0.67 0.666613
Target:  5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3'
miRNA:   3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 43421 0.66 0.751144
Target:  5'- cCGAacCCgaGGcCCGGCGAGGCCGAGg-- -3'
miRNA:   3'- -GCUaaGG--CC-GGCUGUUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 43720 0.67 0.688145
Target:  5'- ---gUCCGGgCCGACcAGGCCGucGGUg- -3'
miRNA:   3'- gcuaAGGCC-GGCUGuUCCGGU--UCGac -5'
19108 5' -55.8 NC_004684.1 + 43951 0.69 0.558594
Target:  5'- aGG-UCUcGCCGuCGAGGCCGAGCa- -3'
miRNA:   3'- gCUaAGGcCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 44547 0.69 0.537417
Target:  5'- aCGAacCCGGUCGGCAggccggugaucGGGUCAGGCa- -3'
miRNA:   3'- -GCUaaGGCCGGCUGU-----------UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 44950 0.67 0.6774
Target:  5'- gGAUcgccgCCGcGCCGACGgcgauggcguugAGGCCcagcGGGCUGg -3'
miRNA:   3'- gCUAa----GGC-CGGCUGU------------UCCGG----UUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.