miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 45469 0.71 0.436705
Target:  5'- uGAUgcucCCGGCgGugGucaccGGGCCAGGCUa -3'
miRNA:   3'- gCUAa---GGCCGgCugU-----UCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 48079 0.7 0.5062
Target:  5'- cCGGUUCCGGCguCGGCcGGG-CAAGCa- -3'
miRNA:   3'- -GCUAAGGCCG--GCUGuUCCgGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 48129 0.67 0.698839
Target:  5'- cCGGcUCCGG-CGGCAGGGCaucgAAGCa- -3'
miRNA:   3'- -GCUaAGGCCgGCUGUUCCGg---UUCGac -5'
19108 5' -55.8 NC_004684.1 + 51654 0.68 0.58
Target:  5'- ----gCUGGCCGugcACGAGGCCcuuGCUGg -3'
miRNA:   3'- gcuaaGGCCGGC---UGUUCCGGuu-CGAC- -5'
19108 5' -55.8 NC_004684.1 + 52317 0.67 0.698839
Target:  5'- ----aCCGcGCCGAUAAGGCCGucgaccucauccGGCg- -3'
miRNA:   3'- gcuaaGGC-CGGCUGUUCCGGU------------UCGac -5'
19108 5' -55.8 NC_004684.1 + 55417 0.74 0.279387
Target:  5'- uCGGUgccgCCGGUCGcggugugcgccGCAGGuGCCAGGCUGg -3'
miRNA:   3'- -GCUAa---GGCCGGC-----------UGUUC-CGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 55637 0.73 0.323693
Target:  5'- gCGAUUUCGGCUGGCGugcguggaggaGGGCCuGGCg- -3'
miRNA:   3'- -GCUAAGGCCGGCUGU-----------UCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 57886 0.71 0.417872
Target:  5'- cCGGUgCUGGCUGGu--GGCCGGGCUGa -3'
miRNA:   3'- -GCUAaGGCCGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 61432 0.66 0.739842
Target:  5'- ----gCCGGucgcucaCCGGCGcGGCCAGGUUGg -3'
miRNA:   3'- gcuaaGGCC-------GGCUGUuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 62886 0.67 0.687073
Target:  5'- gGAUcCCGGCCaugccguugccacGGC-GGGCCAGGCc- -3'
miRNA:   3'- gCUAaGGCCGG-------------CUGuUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 63468 0.67 0.644953
Target:  5'- -aGUUCCGGCauucgggggcGCGAGGCCuccAGCUGc -3'
miRNA:   3'- gcUAAGGCCGgc--------UGUUCCGGu--UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 63683 0.66 0.740874
Target:  5'- uGAUaCCGGCCaGCGcGGCgGcGCUGg -3'
miRNA:   3'- gCUAaGGCCGGcUGUuCCGgUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 63914 0.66 0.709469
Target:  5'- aCGGUg-CGGcCCGGCGuGGCUGAGCUu -3'
miRNA:   3'- -GCUAagGCC-GGCUGUuCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 64729 0.76 0.215899
Target:  5'- uCGggUCCaucuuguGGCCGACcugcuGGCCGAGCUGg -3'
miRNA:   3'- -GCuaAGG-------CCGGCUGuu---CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 65347 0.67 0.6774
Target:  5'- aCGAUggCGGCCccCAGGGCCAccagGGCg- -3'
miRNA:   3'- -GCUAagGCCGGcuGUUCCGGU----UCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.