miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 19138 0.7 0.485824
Target:  5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3'
miRNA:   3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 18462 0.7 0.495964
Target:  5'- ---gUUCGG-CGACGAGGCCGGGCc- -3'
miRNA:   3'- gcuaAGGCCgGCUGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 18088 0.7 0.465846
Target:  5'- uCGAUcCUGGaCGGCAAGGCCAccgAGCg- -3'
miRNA:   3'- -GCUAaGGCCgGCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 17344 0.68 0.612402
Target:  5'- cCGGUUCCuGGCCuggagccaGGCAccGGCCAcGCUGc -3'
miRNA:   3'- -GCUAAGG-CCGG--------CUGUu-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 16527 0.66 0.720026
Target:  5'- cCGAUg-UGGCCGcCGAGGUUGAGCa- -3'
miRNA:   3'- -GCUAagGCCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 16454 0.68 0.612402
Target:  5'- ---aUCgUGcGCCugGACGAGGCCGGGCUGu -3'
miRNA:   3'- gcuaAG-GC-CGG--CUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 16352 0.71 0.446304
Target:  5'- uGGcgCUGGCCGACAAgcuggcGGCCGAGUa- -3'
miRNA:   3'- gCUaaGGCCGGCUGUU------CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 16161 0.72 0.381731
Target:  5'- uCGA--CCGGCCGAU--GGCCAAGgUGa -3'
miRNA:   3'- -GCUaaGGCCGGCUGuuCCGGUUCgAC- -5'
19108 5' -55.8 NC_004684.1 + 16037 0.67 0.688146
Target:  5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3'
miRNA:   3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 15501 0.66 0.70841
Target:  5'- -aGUUCCuggacaaGGCCGccCGGGGCCGGGCg- -3'
miRNA:   3'- gcUAAGG-------CCGGCu-GUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 15414 0.66 0.740874
Target:  5'- gCGA---UGGCCGACAccguGGCCAcccuGCUGc -3'
miRNA:   3'- -GCUaagGCCGGCUGUu---CCGGUu---CGAC- -5'
19108 5' -55.8 NC_004684.1 + 13857 0.68 0.634102
Target:  5'- aGGUcaUCCGcGCCGACcuGGCCAuucAGgaGg -3'
miRNA:   3'- gCUA--AGGC-CGGCUGuuCCGGU---UCgaC- -5'
19108 5' -55.8 NC_004684.1 + 12679 0.76 0.216462
Target:  5'- uGGUggaGGCCGACGAGGCCAuuuccGCUGc -3'
miRNA:   3'- gCUAaggCCGGCUGUUCCGGUu----CGAC- -5'
19108 5' -55.8 NC_004684.1 + 12122 0.66 0.740875
Target:  5'- cCGAccCCGGCUGAgGAGaucaGCCGAcuGCUGg -3'
miRNA:   3'- -GCUaaGGCCGGCUgUUC----CGGUU--CGAC- -5'
19108 5' -55.8 NC_004684.1 + 12003 0.67 0.688145
Target:  5'- gCGAagguUUCCGGCgCGAUccGGGCCA-GCUu -3'
miRNA:   3'- -GCU----AAGGCCG-GCUGu-UCCGGUuCGAc -5'
19108 5' -55.8 NC_004684.1 + 11092 0.77 0.189803
Target:  5'- aCGuc-CCGGCgCGcCAGGGCCGGGCUGa -3'
miRNA:   3'- -GCuaaGGCCG-GCuGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 10892 0.67 0.688145
Target:  5'- cCGGUgaccacCCGGgUCGGCGcguacAGGCCGAGCa- -3'
miRNA:   3'- -GCUAa-----GGCC-GGCUGU-----UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 10496 0.68 0.634102
Target:  5'- ----cCCGGCCGACGcacuGGGCCGccgacggucAGCg- -3'
miRNA:   3'- gcuaaGGCCGGCUGU----UCCGGU---------UCGac -5'
19108 5' -55.8 NC_004684.1 + 10091 0.69 0.573557
Target:  5'- cCGGgcagggCUGGCCGGggugcggcucgccguCAcAGGCCGAGCUGu -3'
miRNA:   3'- -GCUaa----GGCCGGCU---------------GU-UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 9906 0.71 0.443412
Target:  5'- aCGAguggUCCgGGCUGACcgaggcggugauuguGGCCGGGCUGa -3'
miRNA:   3'- -GCUa---AGG-CCGGCUGuu-------------CCGGUUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.