miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 41646 0.67 0.666613
Target:  5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3'
miRNA:   3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 43951 0.69 0.558594
Target:  5'- aGG-UCUcGCCGuCGAGGCCGAGCa- -3'
miRNA:   3'- gCUaAGGcCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 23031 0.68 0.611319
Target:  5'- gCGAuUUCCuGCCacgccuuggugacGGCcuGGCCAAGCUGg -3'
miRNA:   3'- -GCU-AAGGcCGG-------------CUGuuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 23103 0.68 0.612402
Target:  5'- cCGAgcagUCCGG-CGAUcuGGCCAAGUg- -3'
miRNA:   3'- -GCUa---AGGCCgGCUGuuCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 13857 0.68 0.634102
Target:  5'- aGGUcaUCCGcGCCGACcuGGCCAuucAGgaGg -3'
miRNA:   3'- gCUA--AGGC-CGGCUGuuCCGGU---UCgaC- -5'
19108 5' -55.8 NC_004684.1 + 10496 0.68 0.634102
Target:  5'- ----cCCGGCCGACGcacuGGGCCGccgacggucAGCg- -3'
miRNA:   3'- gcuaaGGCCGGCUGU----UCCGGU---------UCGac -5'
19108 5' -55.8 NC_004684.1 + 63468 0.67 0.644953
Target:  5'- -aGUUCCGGCauucgggggcGCGAGGCCuccAGCUGc -3'
miRNA:   3'- gcUAAGGCCGgc--------UGUUCCGGu--UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 25950 0.67 0.655793
Target:  5'- aGGUgCCcaacGCCGAgcuGGCCAAGCUGg -3'
miRNA:   3'- gCUAaGGc---CGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 6619 0.67 0.666613
Target:  5'- cCGGaaCCGGCCuGGcCAGGGCCGuGCUc -3'
miRNA:   3'- -GCUaaGGCCGG-CU-GUUCCGGUuCGAc -5'
19108 5' -55.8 NC_004684.1 + 44547 0.69 0.537417
Target:  5'- aCGAacCCGGUCGGCAggccggugaucGGGUCAGGCa- -3'
miRNA:   3'- -GCUaaGGCCGGCUGU-----------UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 24392 0.69 0.526932
Target:  5'- aGAUUCaggugaaGGCCGACAccaagaAGGcCCAGGCc- -3'
miRNA:   3'- gCUAAGg------CCGGCUGU------UCC-GGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 48079 0.7 0.5062
Target:  5'- cCGGUUCCGGCguCGGCcGGG-CAAGCa- -3'
miRNA:   3'- -GCUAAGGCCG--GCUGuUCCgGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 12679 0.76 0.216462
Target:  5'- uGGUggaGGCCGACGAGGCCAuuuccGCUGc -3'
miRNA:   3'- gCUAaggCCGGCUGUUCCGGUu----CGAC- -5'
19108 5' -55.8 NC_004684.1 + 32649 0.75 0.26573
Target:  5'- aGAUcgugCCGGuuGGCAAGGCCuGGCg- -3'
miRNA:   3'- gCUAa---GGCCggCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 55637 0.73 0.323693
Target:  5'- gCGAUUUCGGCUGGCGugcguggaggaGGGCCuGGCg- -3'
miRNA:   3'- -GCUAAGGCCGGCUGU-----------UCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 57886 0.71 0.417872
Target:  5'- cCGGUgCUGGCUGGu--GGCCGGGCUGa -3'
miRNA:   3'- -GCUAaGGCCGGCUguuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 9906 0.71 0.443412
Target:  5'- aCGAguggUCCgGGCUGACcgaggcggugauuguGGCCGGGCUGa -3'
miRNA:   3'- -GCUa---AGG-CCGGCUGuu-------------CCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 16352 0.71 0.446304
Target:  5'- uGGcgCUGGCCGACAAgcuggcGGCCGAGUa- -3'
miRNA:   3'- gCUaaGGCCGGCUGUU------CCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 6204 0.7 0.485824
Target:  5'- uCGAUggccUCCGGCgCGAUcucGGCC-AGCUGg -3'
miRNA:   3'- -GCUA----AGGCCG-GCUGuu-CCGGuUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 22819 0.7 0.495964
Target:  5'- uCGA--CCGGCaguuccCGGCGgugcAGGCCGGGCUGg -3'
miRNA:   3'- -GCUaaGGCCG------GCUGU----UCCGGUUCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.