miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 51654 0.68 0.58
Target:  5'- ----gCUGGCCGugcACGAGGCCcuuGCUGg -3'
miRNA:   3'- gcuaaGGCCGGC---UGUUCCGGuu-CGAC- -5'
19108 5' -55.8 NC_004684.1 + 17344 0.68 0.612402
Target:  5'- cCGGUUCCuGGCCuggagccaGGCAccGGCCAcGCUGc -3'
miRNA:   3'- -GCUAAGG-CCGG--------CUGUu-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 16454 0.68 0.612402
Target:  5'- ---aUCgUGcGCCugGACGAGGCCGGGCUGu -3'
miRNA:   3'- gcuaAG-GC-CGG--CUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 26728 0.68 0.634101
Target:  5'- ----gCUGGCCGagcgcgacugGCGGGGCCAGGCc- -3'
miRNA:   3'- gcuaaGGCCGGC----------UGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 8955 0.67 0.6774
Target:  5'- uCGggUCCGGC--ACGGGGCCGgaGGCa- -3'
miRNA:   3'- -GCuaAGGCCGgcUGUUCCGGU--UCGac -5'
19108 5' -55.8 NC_004684.1 + 44950 0.67 0.6774
Target:  5'- gGAUcgccgCCGcGCCGACGgcgauggcguugAGGCCcagcGGGCUGg -3'
miRNA:   3'- gCUAa----GGC-CGGCUGU------------UCCGG----UUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 3355 0.7 0.506199
Target:  5'- uCGAggCCGacaccGCCGACAccgAGGUCAAGCg- -3'
miRNA:   3'- -GCUaaGGC-----CGGCUGU---UCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 18462 0.7 0.495964
Target:  5'- ---gUUCGG-CGACGAGGCCGGGCc- -3'
miRNA:   3'- gcuaAGGCCgGCUGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 5588 0.85 0.059137
Target:  5'- gCGAcccgCCuGCCGACGGGGCCGAGCUGg -3'
miRNA:   3'- -GCUaa--GGcCGGCUGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 3839 0.78 0.175228
Target:  5'- uGAUggcagCGGCCGAgGAGGCCGAGCg- -3'
miRNA:   3'- gCUAag---GCCGGCUgUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 11092 0.77 0.189803
Target:  5'- aCGuc-CCGGCgCGcCAGGGCCGGGCUGa -3'
miRNA:   3'- -GCuaaGGCCG-GCuGUUCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 55417 0.74 0.279387
Target:  5'- uCGGUgccgCCGGUCGcggugugcgccGCAGGuGCCAGGCUGg -3'
miRNA:   3'- -GCUAa---GGCCGGC-----------UGUUC-CGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 21859 0.74 0.300173
Target:  5'- cCGGUgcgCCGGUCGaagagguggaugaGCAGGGCCAGGCc- -3'
miRNA:   3'- -GCUAa--GGCCGGC-------------UGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 36383 0.72 0.364459
Target:  5'- ----aCCGGUCGGCGucAGGCCcAGCUGc -3'
miRNA:   3'- gcuaaGGCCGGCUGU--UCCGGuUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 8987 0.72 0.381731
Target:  5'- gGGUUCCGG-CGGCcGGGCCAAGg-- -3'
miRNA:   3'- gCUAAGGCCgGCUGuUCCGGUUCgac -5'
19108 5' -55.8 NC_004684.1 + 16161 0.72 0.381731
Target:  5'- uCGA--CCGGCCGAU--GGCCAAGgUGa -3'
miRNA:   3'- -GCUaaGGCCGGCUGuuCCGGUUCgAC- -5'
19108 5' -55.8 NC_004684.1 + 45469 0.71 0.436705
Target:  5'- uGAUgcucCCGGCgGugGucaccGGGCCAGGCUa -3'
miRNA:   3'- gCUAa---GGCCGgCugU-----UCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 478 0.71 0.456019
Target:  5'- aGGUUgUGGCCGcCAAGGCCGcGCc- -3'
miRNA:   3'- gCUAAgGCCGGCuGUUCCGGUuCGac -5'
19108 5' -55.8 NC_004684.1 + 18088 0.7 0.465846
Target:  5'- uCGAUcCUGGaCGGCAAGGCCAccgAGCg- -3'
miRNA:   3'- -GCUAaGGCCgGCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 19138 0.7 0.485824
Target:  5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3'
miRNA:   3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.