Results 61 - 75 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 11092 | 0.77 | 0.189803 |
Target: 5'- aCGuc-CCGGCgCGcCAGGGCCGGGCUGa -3' miRNA: 3'- -GCuaaGGCCG-GCuGUUCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 3839 | 0.78 | 0.175228 |
Target: 5'- uGAUggcagCGGCCGAgGAGGCCGAGCg- -3' miRNA: 3'- gCUAag---GCCGGCUgUUCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 5588 | 0.85 | 0.059137 |
Target: 5'- gCGAcccgCCuGCCGACGGGGCCGAGCUGg -3' miRNA: 3'- -GCUaa--GGcCGGCUGUUCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 45469 | 0.71 | 0.436705 |
Target: 5'- uGAUgcucCCGGCgGugGucaccGGGCCAGGCUa -3' miRNA: 3'- gCUAa---GGCCGgCugU-----UCCGGUUCGAc -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 478 | 0.71 | 0.456019 |
Target: 5'- aGGUUgUGGCCGcCAAGGCCGcGCc- -3' miRNA: 3'- gCUAAgGCCGGCuGUUCCGGUuCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 18088 | 0.7 | 0.465846 |
Target: 5'- uCGAUcCUGGaCGGCAAGGCCAccgAGCg- -3' miRNA: 3'- -GCUAaGGCCgGCUGUUCCGGU---UCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 8437 | 0.69 | 0.537417 |
Target: 5'- ----cUCGGCgGACAGGGCCcGGCg- -3' miRNA: 3'- gcuaaGGCCGgCUGUUCCGGuUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 1421 | 0.69 | 0.537417 |
Target: 5'- gGAggCCuGCCGGgcCAagguccAGGCCGAGCUGg -3' miRNA: 3'- gCUaaGGcCGGCU--GU------UCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 41085 | 0.69 | 0.526931 |
Target: 5'- ----cCCGG-CGGCcuGGCCGAGCUGc -3' miRNA: 3'- gcuaaGGCCgGCUGuuCCGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 301 | 0.7 | 0.516523 |
Target: 5'- aGAguucgCUGGCCGcCGAGGCCAAcGCc- -3' miRNA: 3'- gCUaa---GGCCGGCuGUUCCGGUU-CGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 32225 | 0.7 | 0.506199 |
Target: 5'- cCGGUUCCGGCuCGGCca--CCGAGUUGg -3' miRNA: 3'- -GCUAAGGCCG-GCUGuuccGGUUCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 3355 | 0.7 | 0.506199 |
Target: 5'- uCGAggCCGacaccGCCGACAccgAGGUCAAGCg- -3' miRNA: 3'- -GCUaaGGC-----CGGCUGU---UCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 18462 | 0.7 | 0.495964 |
Target: 5'- ---gUUCGG-CGACGAGGCCGGGCc- -3' miRNA: 3'- gcuaAGGCCgGCUGUUCCGGUUCGac -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 19138 | 0.7 | 0.485824 |
Target: 5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3' miRNA: 3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5' |
|||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 4828 | 1.09 | 0.001102 |
Target: 5'- uCGAUUCCGGCCGACAAGGCCAAGCUGg -3' miRNA: 3'- -GCUAAGGCCGGCUGUUCCGGUUCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home